Mock Version: 5.6 Mock Version: 5.6 Mock Version: 5.6 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f42-build-54765790-6529325/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4qfyyhb0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4qfyyhb0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f6d3078d555043c89444bf38c6de51a4', '-D', '/var/lib/mock/f42-build-54765790-6529325/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4qfyyhb0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725321600 Wrote: /builddir/build/SRPMS/gromacs-2024.3-1.fc42.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f42-build-54765790-6529325/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4qfyyhb0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4qfyyhb0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0e0337f864a3453cb8a532ac5858c719', '-D', '/var/lib/mock/f42-build-54765790-6529325/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4qfyyhb0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725321600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.dTgSrV + umask 022 + cd /builddir/build/BUILD/gromacs-2024.3-build + test -d /builddir/build/BUILD/gromacs-2024.3-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/gromacs-2024.3-build + /usr/bin/rm -rf /builddir/build/BUILD/gromacs-2024.3-build + /usr/bin/mkdir -p /builddir/build/BUILD/gromacs-2024.3-build + /usr/bin/mkdir -p /builddir/build/BUILD/gromacs-2024.3-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.7E5XR0 + umask 022 + cd /builddir/build/BUILD/gromacs-2024.3-build + cd /builddir/build/BUILD/gromacs-2024.3-build + rm -rf gromacs-2024.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/gromacs-2024.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2024.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/regressiontests-2024.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + install -Dpm644 /builddir/build/SOURCES/manual-2024.3.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/fftpack src/external/tng_io src/external/lmfit src/external/muparser + sed -i 's/set(_timeout [0-9]*)/set(_timeout 9000)/' src/testutils/TestMacros.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0Amn7s + umask 022 + cd /builddir/build/BUILD/gromacs-2024.3-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2024.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + pushd serial + test -z '' + cp -al ../regressiontests-2024.3 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ echo -DGMX_X11=ON ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/tests ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora42 -DGMX_SIMD=SSE2 -DGMX_X11=ON -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/tests -DGMX_GPU=OpenCL -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.13.0", minimum required is "3.7") -- Selected GPU FFT library - clFFT -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Using default binary suffix: "" -- Using default library suffix: "" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel and AMD GPUs. -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2670 v3 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 63 -- Detected build CPU stepping - 2 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdcm pdpe1gb popcnt pse rdrnd rdtscp sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Found Python: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (20.9s) -- Generating done (0.9s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH GMX_X11 INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j48 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory 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src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.13 -D PROJECT_VERSION=2024.3-Fedora42 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora42 -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/abstractoption.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/accessors.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/behaviorcollection.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/action.transpose.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o [ 3%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o [ 3%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/filenameoption.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -MF CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/enqueue.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/mdrun.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/fft_binary_lookup.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o [ 5%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o [ 5%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.copy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/errhandler.cpp [ 5%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/lock.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/filenameoptionmanager.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/eigensolver.cpp [ 5%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/basicoptions.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/pthreads.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops 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/usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/timeunitmanager.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/treesupport.cpp [ 5%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/sparsematrix.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/fft_binary_lookup.h:23, from 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Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_abf.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_alb.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/stdafx.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_histogram.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/p2p_wait.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/collective.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/profile.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/comm.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_meta.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/reduce.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/event.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_alchlambda.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_angles.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_apath.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/reduce_fast.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/gather.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_combination.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_coordnums.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/scatter.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_distances.cpp [ 9%] Built target gmx_objlib [ 9%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_gpath.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/type.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/scan.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/numa_malloc.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/once.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_protein.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_rotations.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_volmaps.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvardeps.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvargrid.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarmodule.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparams.cpp [ 9%] Built target energyanalysis [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparse.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_io.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_replicas.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 9%] Built target mdrun_objlib [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_system.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_tcl.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_volmaps.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvars_memstream.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_bias.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_colvar.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvartypes.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarvalue.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 11%] Built target thread_mpi [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/nr_jacobi.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 11%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/output.cpp [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullcoordexpressionparser.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullutil.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/transformationcoordinate.cpp [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull_rotation.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 11%] Built target scanner gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 11%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/findallgputasks.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/trajectoryelement.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 12%] Built target options In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/taskassignment.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/reportgpuusage.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/forceelement.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include/gromacs/taskassignment/resourcedivision.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/resourcedivision.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/decidegpuusage.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/decidesimulationworkload.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/modularsimulator.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/checkpointhelper.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/topologyholder.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/computeglobalselement.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/statepropagatordata.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 12%] Built target colvars_objlib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 12%] Built target taskassignment gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 12%] Built target clFFT gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 12%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 12%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/basenetwork.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/alignedallocator.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/booltype.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/gmxassert.cpp [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/fileredirector.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/keyvaluetree.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ 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CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/logger.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -MF CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/programcontext.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/smalloc.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/textreader.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/textwriter.cpp [ 18%] 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -MF CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/txtdump.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include 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-MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [ 20%] Building CXX object 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include 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-MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/prunekerneldispatch.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlinehelpcontext.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlineparser.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlineoptionsmodule.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlineprogramcontext.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/filenm.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/pargs.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_geometry.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/atomdistribution.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_setup.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/box.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_ref.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp:36: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/freeenergydispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/collect.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/computemultibodycutoffs.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/gridset.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/distribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/grid.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/prunekerneldispatch.cpp:40: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairsearch.h:56, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairsearch.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/benchmark/bench_system.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlist_tuning.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlb.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlbtiming.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlistparams.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlist.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/gpu_data_mgmt.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kerneldispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_prune_kernel.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_constraints.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_network.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_setup.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/box.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_specatomcomm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/atomdistribution.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlbtiming.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/ga2la.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localatomset.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlb.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopology.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopologychecker.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/cellsizes.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/makebondedlinks.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/mdsetup.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/collect.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/nsgrid.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_setup.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_specatomcomm.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/redistribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_constraints.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_network.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/gpuhaloexchange.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/utility.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/3dtransforms.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/coordinatetransformation.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -MF CMakeFiles/libgromacs.dir/math/densityfit.cpp.o.d -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/densityfit.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_vsite.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/distribute.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-MT src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -MF CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o.d -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/exponentialmovingaverage.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -MF CMakeFiles/libgromacs.dir/math/functions.cpp.o.d -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/functions.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/mdsetup.cpp:38: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/gausstransform.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/invertmatrix.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/makebondedlinks.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/nsgrid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/matrix.cpp.o -MF CMakeFiles/libgromacs.dir/math/matrix.cpp.o.d -o CMakeFiles/libgromacs.dir/math/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/matrix.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopologychecker.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopology.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -MF CMakeFiles/libgromacs.dir/math/optimization.cpp.o.d -o CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/optimization.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/utility.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/utility.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -MF CMakeFiles/libgromacs.dir/math/utilities.cpp.o.d -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/utilities.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dump.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -MF CMakeFiles/libgromacs.dir/math/veccompare.cpp.o.d -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/veccompare.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -MF CMakeFiles/libgromacs.dir/math/vecdump.cpp.o.d -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/vecdump.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/awh_history.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/reversetopology.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/energyhistory.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/redistribute.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/forcebuffers.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/group.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/iforceprovider.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/partition.cpp:82: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/pbcmethods.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/pbcenums.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-MT src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -MF CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tabulatednormaldistribution.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -MF CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/splineutil.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_awh.cpp [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_bar.cpp [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_bundle.cpp [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include 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-MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_nmens.cpp [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_nmr.cpp [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/nrama.cpp [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/toputil.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/vsite_parm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/grompp.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/modules/average.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/outputadaptercontainer.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/modules/freevolume.cpp [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/constr.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/pme_error.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/constraintrange.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd 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-MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/enerdata_utils.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/energydrifttracker.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tune_pme.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/force.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/forcerec.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/calc_verletbuf.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/groupcoord.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/lincs.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/constr.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/mdatoms.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/mdebin_bar.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/gpuforcereduction.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/perf_est.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/force.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/rbin.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/resethandler.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/lincs.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/rf_util.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/shake.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/sighandler.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/forcerec.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/sim_util.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/simulationsignal.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/mdatoms.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/md_support.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tgroup.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/trajectory_writing.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/resethandler.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/perf_est.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_vv.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/updategroups.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/sim_util.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/updategroupscog.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/stat.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/vcm.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/vsite.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_constrain_gpu.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/biassharing.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o cd 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-MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/biasstate.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/correlationtensor.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/vsite.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/pairs.cpp [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/position_restraints.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/qmmm.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/calculate_spline_moduli.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/manage_threading.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer.h:53, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_types.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/ewald.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_load_balancing.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_spline_work.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_spread.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_grid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_load_balancing.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_only.cpp:73: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp_comm_gpu.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_spread.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_timings.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_force_sender_gpu.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_coordinate_receiver_gpu.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/parallel_3dfft.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/fft_fftw3.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include 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-MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/clfftinitializer.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_manager.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_timings.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/hostallocator.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gpu_utils.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_grid.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gpueventsynchronizer_helpers.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/nvshmem_utils.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_manager.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_ocl.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/pmalloc.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_impl.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_impl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_caching.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/cpuinfo.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include/clFFT.h:33, from 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_management_common.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd 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-MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/hardwaretopology.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/printhardware.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/simd_support.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/identifyavx512fmaunits.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/md.cpp [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/membedholder.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/mdmodules.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/mimic.cpp [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/minimize.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_caching.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_caching.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/handlerestart.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_management_ocl.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/logging.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_management_common.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/threadaffinity.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/enxio.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/md.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/minimize.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/mimic.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/espio.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/rerun.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/shellfc.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/g96io.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer.h:53, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/gmx_internal_xdr.cpp [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/gmxfio.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/runner.cpp:59: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/tpi.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -MF CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/mempool.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/sm_position.cpp [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/symrec.cpp [ 98%] Linking CXX shared library ../../lib/libgromacs.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgromacs.so.9 -o ../../lib/libgromacs.so.9.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.4 -lmuparser /usr/lib64/liblmfit.so /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.9.0.0 ../../lib/libgromacs.so.9 ../../lib/libgromacs.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 98%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/depend /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/share/template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/share/template 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/mdmodule.cpp [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o -MF CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o.d -o CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/gmxcalculatorcpu.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/version.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/version.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/version.cpp [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/box.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o -MF CMakeFiles/nblib.dir/integrator.cpp.o.d -o CMakeFiles/nblib.dir/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/integrator.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/system.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/system.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/system.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o -MF CMakeFiles/nblib.dir/molecules.cpp.o.d -o CMakeFiles/nblib.dir/molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/molecules.cpp [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/resourceassignment.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o -MF CMakeFiles/nblib.dir/particletype.cpp.o.d -o CMakeFiles/nblib.dir/particletype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/particletype.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/box.cpp.o -MF CMakeFiles/nblib.dir/box.cpp.o.d -o CMakeFiles/nblib.dir/box.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/box.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o -MF CMakeFiles/nblib.dir/simulationstate.cpp.o.d -o CMakeFiles/nblib.dir/simulationstate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/simulationstate.cpp [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/md.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/md.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/md.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o -MF CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d -o CMakeFiles/nblib.dir/topologyhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/topologyhelpers.cpp [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tpr.cpp [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/transformations.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/conversions.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -MF CMakeFiles/nblib.dir/util/setup.cpp.o.d -o CMakeFiles/nblib.dir/util/setup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/util/setup.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib: ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/nbnxmsetuphelpers.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/gmxcalculatorcpu.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 [100%] Built target gmx /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target template [100%] Linking CXX shared library ../../lib/libgmxapi.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmxapi.so.0 -o ../../lib/libgmxapi.so.0.4.0 CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o CMakeFiles/gmxapi.dir/cpp/context.cpp.o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o CMakeFiles/gmxapi.dir/cpp/md.cpp.o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o CMakeFiles/gmxapi.dir/cpp/session.cpp.o CMakeFiles/gmxapi.dir/cpp/status.cpp.o CMakeFiles/gmxapi.dir/cpp/system.cpp.o CMakeFiles/gmxapi.dir/cpp/version.cpp.o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib: ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgmxapi.so.0.4.0 ../../lib/libgmxapi.so.0 ../../lib/libgmxapi.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target gmxapi [100%] Linking CXX shared library ../../lib/libnblib_gmx.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libnblib_gmx.so.0 -o ../../lib/libnblib_gmx.so.0.1.0 CMakeFiles/nblib.dir/box.cpp.o CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o CMakeFiles/nblib.dir/integrator.cpp.o CMakeFiles/nblib.dir/interactions.cpp.o CMakeFiles/nblib.dir/molecules.cpp.o CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o CMakeFiles/nblib.dir/particlesequencer.cpp.o CMakeFiles/nblib.dir/particletype.cpp.o CMakeFiles/nblib.dir/simulationstate.cpp.o CMakeFiles/nblib.dir/topologyhelpers.cpp.o CMakeFiles/nblib.dir/topology.cpp.o CMakeFiles/nblib.dir/tpr.cpp.o CMakeFiles/nblib.dir/virials.cpp.o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o CMakeFiles/nblib.dir/util/setup.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib: -lm ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_symlink_library ../../lib/libnblib_gmx.so.0.1.0 ../../lib/libnblib_gmx.so.0 ../../lib/libnblib_gmx.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target nblib /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Building CXX object api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o [100%] Building CXX object api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -MF CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d -o CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples/argon-forces-integration.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -MF CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d -o CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples/methane-water-integration.cpp [100%] Linking CXX executable ../../../bin/argon-forces-integration cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/argon-forces-integration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o" -o ../../../bin/argon-forces-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib [100%] Linking CXX executable ../../../bin/methane-water-integration cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/methane-water-integration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o" -o ../../../bin/methane-water-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target argon-forces-integration gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target methane-water-integration gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p mpich ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + pushd mpich + test -z mpich + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n mpich ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib ++ test -z mpich ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora42 -DGMX_SIMD=SSE2 -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DGMX_GPU=OpenCL -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.13.0", minimum required is "3.7") -- Selected GPU FFT library - clFFT -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") found components: CXX -- Using manually set binary suffix: "_mpich" -- Using manually set library suffix: "_mpich" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel and AMD GPUs. -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2670 v3 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 63 -- Detected build CPU stepping - 2 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdcm pdpe1gb popcnt pse rdrnd rdtscp sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Found Python: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (22.0s) -- Generating done (1.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j48 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend gmake[2]: Entering directory 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src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory 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src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build gmake[2]: Entering directory 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src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 1%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o [ 1%] Generating release version information [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora42 -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include 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CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/abstractoption.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o [ 1%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/matrix.cpp [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o [ 1%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/sparsematrix.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/basicoptions.cpp [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/gmx.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/legacymodules.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o [ 1%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/accessors.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/action.transpose.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/behaviorcollection.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvar_neuralnetworkcompute.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/tmpi_malloc.cpp [ 5%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/errhandler.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvar.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/filenameoption.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/parser.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvaratoms.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/fft_binary_lookup.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/scanner.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/nonbonded_bench.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 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/usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/atomic.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/filenameoptionmanager.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_alb.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/options.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/optionsection.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/timeunitmanager.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/treesupport.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/lock.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/optionsassigner.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/pthreads.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/lifetime.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/md5sum.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/plan.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/repo.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/stdafx.cpp [ 5%] Built target release-version-info [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/transform.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_histogram.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_meta.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 5%] Built target thread_mpi [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/stdafx.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_alchlambda.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_angles.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_apath.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_combination.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_coordnums.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_distances.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_gpath.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_neuralnetwork.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 7%] Built target gmx_objlib [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_protein.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_rotations.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_volmaps.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvardeps.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvargrid.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarmodule.cpp [ 7%] Built target energyanalysis [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparams.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparse.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_io.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_replicas.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_system.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_tcl.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_volmaps.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvars_memstream.cpp [ 8%] Built target mdrun_objlib [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_bias.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_colvar.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvartypes.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarvalue.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/nr_jacobi.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 8%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull_rotation.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/output.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullcoordexpressionparser.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullutil.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/transformationcoordinate.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 8%] Built target scanner gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 8%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/taskassignment.cpp [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/resourcedivision.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/topologyholder.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 12%] Built target options In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/forceelement.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/reportgpuusage.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include/gromacs/taskassignment/resourcedivision.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/resourcedivision.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/decidegpuusage.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/decidesimulationworkload.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/taskassignment.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/topologyholder.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/checkpointhelper.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/computeglobalselement.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/modularsimulator.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/statepropagatordata.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 12%] Built target colvars_objlib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 12%] Built target taskassignment gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 12%] Built target clFFT gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 12%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 12%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/baseversion.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -MF CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/filestream.cpp [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/futil.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -MF CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/keyvaluetreetransform.cpp [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/keyvaluetree.cpp [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/init.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -MF CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/stringstream.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/stringutil.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o -MF CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/sycl_version_information.cpp [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -MF CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/sysinfo.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/textreader.cpp [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/gridset.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlineparser.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlineprogramcontext.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/filenm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/pargs.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/viewit.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/shellcompletions.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_geometry.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/atomdistribution.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_setup.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_ref.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp:36: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/box.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/prunekerneldispatch.cpp:40: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairsearch.h:56, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairsearch.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/cellsizes.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/collect.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/computemultibodycutoffs.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/freeenergydispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/distribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/gridset.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/grid.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlb.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlbtiming.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlistparams.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/benchmark/bench_system.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlist_tuning.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_prune_kernel.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/gpu_data_mgmt.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kerneldispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlist.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_specatomcomm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/box.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dump.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_vsite.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlbtiming.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/atomdistribution.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/ga2la.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localatomset.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localatomsetdata.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlb.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopology.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localatomsetmanager.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/cellsizes.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/makebondedlinks.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/nsgrid.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacIn file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/collect.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ s/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/partition.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/redistribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_setup.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_specatomcomm.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/reversetopology.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/gpuhaloexchange.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/utility.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_constraints.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/3dtransforms.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/coordinatetransformation.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_network.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/distribute.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_vsite.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/gausstransform.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/invertmatrix.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/mdsetup.cpp:38: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopology.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/nsgrid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/makebondedlinks.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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CMakeFiles/libgromacs.dir/math/nrjac.cpp.o.d -o CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/nrjac.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopologychecker.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/utility.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/utility.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -MF CMakeFiles/libgromacs.dir/math/optimization.cpp.o.d -o CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/optimization.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -MF CMakeFiles/libgromacs.dir/math/utilities.cpp.o.d -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/utilities.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dump.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -MF CMakeFiles/libgromacs.dir/math/veccompare.cpp.o.d -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/veccompare.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/awh_history.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/checkpointdata.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/reversetopology.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/energyhistory.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/redistribute.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/forcebuffers.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/group.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/partition.cpp:82: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -MF CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/quadraticsplinetable.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/dens_filter.cpp [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/gen_vsite.cpp [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/genconf.cpp [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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&& /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/readir.cpp [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/toppush.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/topshake.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/toputil.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/grompp.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/vsite_parm.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/xlate.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/constraintrange.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/pme_error.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/ebin.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tune_pme.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/force.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/calc_verletbuf.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/constr.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/forcerec.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/mdgraph_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/gpuforcereduction.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/mdoutf.cpp [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/perf_est.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/force.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/sighandler.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/lincs.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/forcerec.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/simulationsignal.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/sim_util.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/md_support.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/mdatoms.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/stophandler.cpp [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/trajectory_writing.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tgroup.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/resethandler.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/perf_est.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update.cpp [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_vv.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/updategroups.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/updategroupscog.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/sim_util.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/vcm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/stat.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/vsite.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/wall.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/electricfield.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/wholemoleculetransform.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_constrain_gpu.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/awh.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/biassharing.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/biasstate.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/biaswriter.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/pointstate.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/vsite.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/restcbt.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/qmmm.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/calculate_spline_moduli.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/manage_threading.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/ewald.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/ewald_utils.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/long_range_correction.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer.h:53, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_types.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_spline_work.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_grid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_spread.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_load_balancing.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_only.cpp:73: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_program.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_program_impl.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_program.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp_comm_gpu.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_coordinate_receiver_gpu.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_timings.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/calcgrid.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_force_sender_gpu.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/fft.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/fft5d.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/parallel_3dfft.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_spread.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/fft_fftw3.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/clfftinitializer.cpp [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_manager.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_timings.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/hostallocator.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_grid.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gpu_utils.cpp [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context_ocl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_manager.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_impl.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_impl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_caching.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/clfftinitializer.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include 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src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/detecthardware.cpp [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/hardwaretopology.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/legacymdrunoptions.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/md.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/minimize.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_caching.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_caching.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/replicaexchange.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/simulatorbuilder.cpp [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/tpi.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_management_ocl.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/freeenergy.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_management_common.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/mdmodulesnotifiers.cpp [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/multisim.cpp [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/threadaffinity.cpp [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/detecthardware.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/confio.cpp [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/enxio.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/mimic.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/md.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/minimize.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/espio.cpp [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/filetypes.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/shellfc.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer.h:53, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/rerun.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/matio.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/tpi.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/runner.cpp:59: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/md5.cpp [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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&& /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/mrcdensitymapheader.cpp [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mpich.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/share/template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Linking CXX executable ../../bin/gmx_mpich cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/share/template/template.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_mpich -Wl,-rpath,/usr/lib64/mpich/lib: ../../lib/libgromacs_mpich.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/mpich/lib ../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n mpich + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p openmpi ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + pushd openmpi + test -z openmpi + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n openmpi ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib ++ test -z openmpi ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora42 -DGMX_SIMD=SSE2 -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DGMX_GPU=OpenCL -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.13.0", minimum required is "3.7") -- Selected GPU FFT library - clFFT -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: CXX -- GROMACS library will use OpenMPI 5.0.5 -- Using manually set binary suffix: "_openmpi" -- Using manually set library suffix: "_openmpi" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel and AMD GPUs. -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2670 v3 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 63 -- Detected build CPU stepping - 2 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdcm pdpe1gb popcnt pse rdrnd rdtscp sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Found Python: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (22.2s) -- Generating done (1.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j48 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake 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src/programs/CMakeFiles/mdrun_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 0%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o [ 1%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/energyterm.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/tmpi_malloc.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o [ 1%] Generating release version information cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/nonbonded_bench.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.13 -D PROJECT_VERSION=2024.3-Fedora42 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora42 -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/errhandler.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/pthreads.cpp cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF CMakeFiles/options.dir/abstractsection.cpp.o.d -o CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/abstractsection.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/abstractoption.cpp [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd 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src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o [ 3%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/behaviorcollection.cpp cd 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src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/action.transpose.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/gmx_arpack.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/scanner.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/options.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.copy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/matrix.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG 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src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/optionsassigner.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/sparsematrix.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/accessors.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_abf.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/fft_binary_lookup.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.cpp [ 3%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o [ 5%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/parser.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/legacymodules.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/optionsvisitor.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/lifetime.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_histogram.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/timeunitmanager.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/md5sum.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/treesupport.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/plan.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/repo.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 5%] Built target release-version-info [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_meta.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/stdafx.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/transform.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o [ 5%] Built target thread_mpi cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_alchlambda.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_angles.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_combination.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_apath.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_coordnums.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_distances.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_gpath.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 7%] Built target gmx_objlib [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_protein.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_rotations.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_volmaps.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvardeps.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvargrid.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 7%] Built target energyanalysis [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarmodule.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparams.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparse.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/statTimer/stdafx.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 7%] Built target mdrun_objlib [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_io.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_tcl.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_replicas.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_system.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_volmaps.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvars_memstream.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_bias.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvartypes.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarvalue.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/nr_jacobi.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 8%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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-DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull.cpp [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include 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src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullcoordexpressionparser.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull_rotation.cpp [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullutil.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/output.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/transformationcoordinate.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 8%] Built target scanner gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 8%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/reportgpuusage.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/constraintelement.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/usergpuids.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include/gromacs/taskassignment/resourcedivision.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/resourcedivision.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/taskassignment.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/decidegpuusage.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 12%] Built target options In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/checkpointhelper.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/reportgpuusage.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/decidesimulationworkload.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/statepropagatordata.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/topologyholder.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/forceelement.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/computeglobalselement.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/modularsimulator.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 12%] Built target colvars_objlib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 12%] Built target taskassignment gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 12%] Built target clFFT gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 12%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 12%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/any.cpp [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/booltype.cpp [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -MF CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/compare.cpp [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/futil.cpp [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp [ 31%] 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 36%] Building CXX object 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlineoptionsmodule.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlineparser.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlineprogramcontext.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/filenm.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/shellcompletions.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_geometry.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/viewit.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_setup.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/atomdistribution.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/box.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/cellsizes.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_ref.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp:36: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/freeenergydispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/gridset.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/collect.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/computemultibodycutoffs.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/grid.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/prunekerneldispatch.cpp:40: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairsearch.h:56, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairsearch.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/distribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlb.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/benchmark/bench_system.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlbtiming.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlist_tuning.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlistparams.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/simd_prune_kernel.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/gpu_data_mgmt.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kerneldispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlist.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_setup.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_specatomcomm.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_vsite.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/box.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlbtiming.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/atomdistribution.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/ga2la.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlb.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopologychecker.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/cellsizes.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/collect.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/makebondedlinks.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/mdsetup.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_specatomcomm.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/nsgrid.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/partition.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/redistribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_setup.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/reversetopology.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/gpuhaloexchange.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_constraints.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/utility.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/3dtransforms.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_network.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_vsite.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/distribute.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/gausstransform.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/invertmatrix.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/mdsetup.cpp:38: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/nsgrid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/matrix.cpp.o -MF CMakeFiles/libgromacs.dir/math/matrix.cpp.o.d -o CMakeFiles/libgromacs.dir/math/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/matrix.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -MF CMakeFiles/libgromacs.dir/math/neldermead.cpp.o.d -o CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/neldermead.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopologychecker.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/makebondedlinks.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopology.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -MF CMakeFiles/libgromacs.dir/math/nrjac.cpp.o.d -o CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/nrjac.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/utility.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/utility.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -MF CMakeFiles/libgromacs.dir/math/utilities.cpp.o.d -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/utilities.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -MF CMakeFiles/libgromacs.dir/math/optimization.cpp.o.d -o CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/optimization.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -MF CMakeFiles/libgromacs.dir/math/veccompare.cpp.o.d -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/veccompare.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dump.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -MF CMakeFiles/libgromacs.dir/math/vecdump.cpp.o.d -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/vecdump.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/awh_history.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/reversetopology.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/forcebuffers.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/redistribute.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/group.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/iforceprovider.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/partition.cpp:82: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -MF CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/restraintmdmodule.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/nm2type.cpp [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/pdb2top.cpp [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/toputil.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/vsite_parm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/grompp.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/xlate.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/coupling.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/pme_error.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/dispersioncorrection.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/ebin.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include 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-isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/enerdata_utils.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tune_pme.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/energydrifttracker.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/force.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/forcerec.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/calc_verletbuf.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/freeenergyparameters.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/mdgraph_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/gpuforcereduction.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/membed.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/force.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/perf_est.cpp [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/resethandler.cpp [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/rf_util.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/lincs.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/sighandler.cpp [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/sim_util.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/md_support.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/forcerec.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/mdatoms.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/trajectory_writing.cpp [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/resethandler.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_vv.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/perf_est.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/sim_util.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/updategroups.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/stat.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/vsite.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/wall.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_constrain_gpu.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/wholemoleculetransform.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/correlationhistory.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/vsite.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/restcbt.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/qmmm.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/calculate_spline_moduli.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/manage_threading.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/ewald.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/ewald_utils.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/long_range_correction.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer.h:53, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/opencl/nbnxm_ocl_types.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_spline_work.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_spread.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_grid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_program.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_load_balancing.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_only.cpp:73: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_program_impl.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_program.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp_comm_gpu.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_timings.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_coordinate_receiver_gpu.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/calcgrid.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_force_sender_gpu.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_spread.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/fft.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_manager.cpp [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/hostallocator.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_timings.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_internal.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gpu_utils.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_grid.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gpueventsynchronizer_helpers.cpp [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/nvshmem_utils.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_gpu.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_manager.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_context_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context_ocl.cpp [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_stream_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_ocl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_impl.h:46, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft_impl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include 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src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_caching.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/clfftinitializer.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/identifyavx512fmaunits.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_management_ocl.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/legacymdrunoptions.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_stream_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/mdmodules.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/membedholder.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_caching.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_caching.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/mimic.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/minimize.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/replicaexchange.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/simulatorbuilder.cpp [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/tpi.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_management_ocl.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/freeenergy.cpp [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/handlerestart.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_management_common.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/threadaffinity.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/detecthardware.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/enxio.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/md.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/espio.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/mimic.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/minimize.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/rerun.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/shellfc.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/filetypes.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/g96io.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer.h:53, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/gmx_internal_xdr.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/gmxfio.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/tpi.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/runner.cpp:59: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/gmxfio_xdr.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/groio.cpp [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd 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modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o options/CMakeFiles/options.dir/abstractoption.cpp.o options/CMakeFiles/options.dir/abstractsection.cpp.o options/CMakeFiles/options.dir/basicoptions.cpp.o options/CMakeFiles/options.dir/behaviorcollection.cpp.o options/CMakeFiles/options.dir/filenameoption.cpp.o options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o options/CMakeFiles/options.dir/options.cpp.o options/CMakeFiles/options.dir/optionsassigner.cpp.o options/CMakeFiles/options.dir/optionsection.cpp.o options/CMakeFiles/options.dir/optionsvisitor.cpp.o options/CMakeFiles/options.dir/timeunitmanager.cpp.o options/CMakeFiles/options.dir/treesupport.cpp.o pulling/CMakeFiles/pulling.dir/output.cpp.o pulling/CMakeFiles/pulling.dir/pull.cpp.o pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_openmpi.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/share/template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [100%] Linking CXX executable ../../bin/gmx_openmpi cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/share/template/template.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_openmpi -Wl,-rpath,/usr/lib64/openmpi/lib: ../../lib/libgromacs_openmpi.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/openmpi/lib ../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n openmpi + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; unset MPI_MAN; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset _LMFILES_; unset LOADEDMODULES; unset CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + pushd serial_d + test -z '' + cp -al ../regressiontests-2024.3 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ echo -DGMX_X11=ON ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/tests ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora42 -DGMX_SIMD=SSE2 -DGMX_X11=ON -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/tests -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.13.0", minimum required is "3.7") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2670 v3 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 63 -- Detected build CPU stepping - 2 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdcm pdpe1gb popcnt pse rdrnd rdtscp sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Found Python: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (20.2s) -- Generating done (0.9s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH GMX_X11 INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j48 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend gmake[2]: 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directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build gmake[2]: Entering directory 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvaratoms.cpp [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o [ 4%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/optionsvisitor.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/timeunitmanager.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/optionsection.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/p2p_protocol.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/treesupport.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/barrier.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_abf.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_alb.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c 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CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_histogram.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/p2p_wait.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/collective.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_meta.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_alchlambda.cpp [ 6%] Built target release-version-info [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_angles.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/profile.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_apath.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/comm.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/reduce.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_combination.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_coordnums.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_distances.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_gpath.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_protein.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_rotations.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/event.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_volmaps.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/reduce_fast.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvardeps.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvargrid.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/gather.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/scatter.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarmodule.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparams.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/group.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparse.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_io.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/tmpi_init.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/topology.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/list.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_replicas.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_system.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_tcl.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 9%] Built target gmx_objlib [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_volmaps.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/type.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvars_memstream.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/scan.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/numa_malloc.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/once.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 11%] Built target energyanalysis [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_bias.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_colvar.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvartypes.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarvalue.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/nr_jacobi.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 11%] Built target mdrun_objlib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 11%] Built target thread_mpi gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 11%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/output.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull_rotation.cpp [ 11%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullcoordexpressionparser.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullutil.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/transformationcoordinate.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 11%] Built target scanner gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 11%] Built target options gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 11%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 11%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o [ 11%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o [ 11%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/taskassignment.cpp [ 11%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o [ 11%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/decidegpuusage.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/usergpuids.cpp [ 11%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/findallgputasks.cpp [ 11%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/checkpointhelper.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/reportgpuusage.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/resourcedivision.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/trajectoryelement.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 14%] Built target colvars_objlib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 14%] Built target taskassignment gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 14%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 14%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/alignedallocator.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/basenetwork.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/init.cpp [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -MF CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/stringstream.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/stringutil.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o -MF CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/sycl_version_information.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -MF CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/sysinfo.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/textreader.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/textwriter.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -MF CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/txtdump.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/exclusionchecker.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/grid.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/gridset.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kerneldispatch.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlistset.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlistwork.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairsearch.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlinemodule.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/cellsizes.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlbtiming.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localatomsetdata.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localtopology.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/localatomsetmanager.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/nsgrid.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/partition.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -MF CMakeFiles/libgromacs.dir/math/do_fit.cpp.o.d -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/do_fit.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -MF CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o.d -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/exponentialmovingaverage.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -MF CMakeFiles/libgromacs.dir/math/functions.cpp.o.d -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/functions.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/invertmatrix.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/matrix.cpp.o -MF CMakeFiles/libgromacs.dir/math/matrix.cpp.o.d -o CMakeFiles/libgromacs.dir/math/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/matrix.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -MF CMakeFiles/libgromacs.dir/math/neldermead.cpp.o.d -o CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/neldermead.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -MF CMakeFiles/libgromacs.dir/math/nrjac.cpp.o.d -o CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/nrjac.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-o CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/optimization.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/group.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/inputrec.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/md_enums.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/interaction_const.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -MF CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/forcetable.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -MF CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o.d -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/walltime_accounting.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -MF CMakeFiles/libgromacs.dir/imd/imd.cpp.o.d -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/imd.cpp [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -MF CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o.d -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/imdsocket.cpp [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/cmat.cpp [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/dens_filter.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o.d -o 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_current.cpp [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_dielectric.cpp [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_energy.cpp [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_sham.cpp [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_sigeps.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -MF 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_tcaf.cpp [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/convparm.cpp [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/gen_vsite.cpp [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/genion.cpp [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/gpp_atomtype.cpp [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/grompp.cpp [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/h_db.cpp [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/insert_molecules.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/hizzie.cpp [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/solvate.cpp [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/specbond.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/toputil.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/vsite_parm.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/x2top.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/xlate.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -MF CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o.d -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/autocorr.cpp [ 66%] Building CXX object 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -MF CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/manyautocorrelation.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/modules/average.cpp [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/modules/displacement.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/modules/histogram.cpp [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/modules/angle.cpp [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-sans.cpp [ 70%] Building CXX object 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/modules/trajectory.cpp [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/runnercommon.cpp [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/nrnb.cpp [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/network.cpp [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/broadcaststructs.cpp [ 74%] 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/groupcoord.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/lincs.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/perf_est.cpp [ 75%] Building CXX object 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/trajectory_writing.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tgroup.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/biassharing.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/biaswriter.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/histogramsize.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/pointstate.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/read_params.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/densityfitting.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/densityfittingforceprovider.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/densityfittingoutputprovider.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/qmmm.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/colvarsoptions.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/position_restraints.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme_spread.cpp [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/identifyavx512fmaunits.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/simd_support.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/minimize.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/replicaexchange.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/rerun.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/simulationinputhandle.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/freeenergy.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/gmxfio_xdr.cpp [ 90%] Building CXX object 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/mtxio.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/xdrd.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d -o 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src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -MF CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/mempool.cpp [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -MF CMakeFiles/libgromacs.dir/selection/params.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/params.cpp [ 93%] Building CXX object 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object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include 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-o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/symrec.cpp [ 95%] Linking CXX shared library ../../lib/libgromacs_d.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgromacs_d.so.9 -o ../../lib/libgromacs_d.so.9.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lflexiblas -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.4 -lmuparser /usr/lib64/liblmfit.so /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.9.0.0 ../../lib/libgromacs_d.so.9 ../../lib/libgromacs_d.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 95%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/depend /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 95%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o [ 95%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/context.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/context.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/context.cpp [ 95%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/resourceassignment.cpp [ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o cd 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/version.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/version.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/version.cpp [ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_d -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib: ../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/convertGmxToNblib.cpp [ 98%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target gmx gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target template [ 98%] Linking CXX shared library ../../lib/libgmxapi_d.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmxapi_d.so.0 -o ../../lib/libgmxapi_d.so.0.4.0 CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o CMakeFiles/gmxapi.dir/cpp/context.cpp.o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o CMakeFiles/gmxapi.dir/cpp/md.cpp.o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o CMakeFiles/gmxapi.dir/cpp/session.cpp.o CMakeFiles/gmxapi.dir/cpp/status.cpp.o CMakeFiles/gmxapi.dir/cpp/system.cpp.o CMakeFiles/gmxapi.dir/cpp/version.cpp.o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib: ../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgmxapi_d.so.0.4.0 ../../lib/libgmxapi_d.so.0 ../../lib/libgmxapi_d.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target gmxapi [ 98%] Linking CXX shared library ../../lib/libnblib_gmx.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libnblib_gmx.so.0 -o ../../lib/libnblib_gmx.so.0.1.0 CMakeFiles/nblib.dir/box.cpp.o CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o CMakeFiles/nblib.dir/integrator.cpp.o CMakeFiles/nblib.dir/interactions.cpp.o CMakeFiles/nblib.dir/molecules.cpp.o CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o CMakeFiles/nblib.dir/particlesequencer.cpp.o CMakeFiles/nblib.dir/particletype.cpp.o CMakeFiles/nblib.dir/simulationstate.cpp.o CMakeFiles/nblib.dir/topologyhelpers.cpp.o CMakeFiles/nblib.dir/topology.cpp.o CMakeFiles/nblib.dir/tpr.cpp.o CMakeFiles/nblib.dir/virials.cpp.o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o CMakeFiles/nblib.dir/util/setup.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib: -lm ../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_symlink_library ../../lib/libnblib_gmx.so.0.1.0 ../../lib/libnblib_gmx.so.0 ../../lib/libnblib_gmx.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target nblib /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Building CXX object api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -MF CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d -o CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples/argon-forces-integration.cpp [ 98%] Building CXX object api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -MF CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d -o CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples/methane-water-integration.cpp [100%] Linking CXX executable ../../../bin/argon-forces-integration cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/argon-forces-integration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o" -o ../../../bin/argon-forces-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib [100%] Linking CXX executable ../../../bin/methane-water-integration cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/methane-water-integration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o" -o ../../../bin/methane-water-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [100%] Built target argon-forces-integration gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [100%] Built target methane-water-integration gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p mpich_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + pushd mpich_d + test -z mpich + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n mpich ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib ++ test -z mpich ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora42 -DGMX_SIMD=SSE2 -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.13.0", minimum required is "3.7") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") found components: CXX -- Using manually set binary suffix: "_mpich_d" -- Using manually set library suffix: "_mpich_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2670 v3 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 63 -- Detected build CPU stepping - 2 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdcm pdpe1gb popcnt pse rdrnd rdtscp sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Found Python: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (22.2s) -- Generating done (1.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j48 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/CMakeFiles/gmx_objlib.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/eigensolver.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/mdrun.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/pthreads.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/matrix.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/nonbonded_bench.cpp [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.13 -D PROJECT_VERSION=2024.3-Fedora42 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora42 -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/energyterm.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_abf.cpp [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/lock.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/scanner.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvar_neuralnetworkcompute.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/sparsematrix.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/gmx_arpack.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_alb.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/errhandler.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/abstractoption.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_histogram.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_meta.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/atomic.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF CMakeFiles/options.dir/abstractsection.cpp.o.d -o CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/abstractsection.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_coordnums.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/optionsection.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_distances.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_gpath.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_neuralnetwork.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/optionsvisitor.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/timeunitmanager.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/treesupport.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 1%] Built target release-version-info [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_protein.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_rotations.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_volmaps.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvardeps.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvargrid.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o [ 1%] Built target thread_mpi cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarmodule.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparams.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparse.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_io.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_replicas.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_system.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_tcl.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_volmaps.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 3%] Built target gmx_objlib [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvars_memstream.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_bias.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_colvar.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvartypes.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarvalue.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 3%] Built target energyanalysis [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/nr_jacobi.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 3%] Built target mdrun_objlib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 3%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/output.cpp [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull_rotation.cpp [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullcoordexpressionparser.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullutil.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/transformationcoordinate.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 5%] Built target scanner gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 5%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/checkpointhelper.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/decidegpuusage.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/findallgputasks.cpp [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/computeglobalselement.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/resourcedivision.cpp [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/datafilefinder.cpp cd 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/basenetwork.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/directoryenumerator.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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[ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -MF CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/int64_to_int.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/keyvaluetree.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -MF CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/logger.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/loggerbuilder.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/physicalnodecommunicator.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -MF CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/smalloc.cpp [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -MF CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/stringstream.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/textreader.cpp [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/textwriter.cpp [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -MF CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp cd 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlist.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlist_tuning.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlinemodulemanager.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/cmdlineoptionsmodule.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/pbc.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -MF CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/ifunc.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/modules/average.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/modules/displacement.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/include 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src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/outputadaptercontainer.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/modules/dssp.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/modules/msd.cpp [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/mdmodules.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrun/mimic.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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options/CMakeFiles/options.dir/abstractoption.cpp.o options/CMakeFiles/options.dir/abstractsection.cpp.o options/CMakeFiles/options.dir/basicoptions.cpp.o options/CMakeFiles/options.dir/behaviorcollection.cpp.o options/CMakeFiles/options.dir/filenameoption.cpp.o options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o options/CMakeFiles/options.dir/options.cpp.o options/CMakeFiles/options.dir/optionsassigner.cpp.o options/CMakeFiles/options.dir/optionsection.cpp.o options/CMakeFiles/options.dir/optionsvisitor.cpp.o options/CMakeFiles/options.dir/timeunitmanager.cpp.o options/CMakeFiles/options.dir/treesupport.cpp.o pulling/CMakeFiles/pulling.dir/output.cpp.o pulling/CMakeFiles/pulling.dir/pull.cpp.o pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mpich_d.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/share/template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o [100%] Linking CXX executable ../../bin/gmx_mpich_d cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/share/template/template.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_mpich_d -Wl,-rpath,/usr/lib64/mpich/lib: ../../lib/libgromacs_mpich_d.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/mpich/lib ../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n mpich + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p openmpi_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + pushd openmpi_d + test -z openmpi + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n openmpi ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib ++ test -z openmpi ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora42 -DGMX_SIMD=SSE2 -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.13.0", minimum required is "3.7") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: CXX -- GROMACS library will use OpenMPI 5.0.5 -- Using manually set binary suffix: "_openmpi_d" -- Using manually set library suffix: "_openmpi_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2670 v3 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 63 -- Detected build CPU stepping - 2 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdcm pdpe1gb popcnt pse rdrnd rdtscp sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Found Python: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (21.9s) -- Generating done (1.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j48 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/linearalgebra 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/basicoptions.cpp [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/sparsematrix.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/scanner.cpp [ 0%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o [ 0%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/filenameoption.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/src/pthreads.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_abf.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/filenameoptionmanager.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/legacymodules.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/include 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-Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/energyterm.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/options.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o cd 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CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/nonbonded_bench.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/optionsection.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvar_neuralnetworkcompute.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF 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-isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/optionsvisitor.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/treesupport.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_gpath.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_protein.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarcomp_rotations.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvardeps.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvargrid.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 1%] Built target thread_mpi [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarmodule.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparams.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarparse.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_io.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_replicas.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_system.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_tcl.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarproxy_volmaps.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 3%] Built target gmx_objlib [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvars_memstream.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_bias.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarscript_commands_colvar.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvartypes.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarvalue.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 3%] Built target energyanalysis [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/nr_jacobi.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 3%] Built target mdrun_objlib In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 3%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 3%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/output.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull.cpp [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pull_rotation.cpp [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullutil.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/pullcoordexpressionparser.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/transformationcoordinate.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 5%] Built target scanner gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 5%] Built target options gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 5%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/reportgpuusage.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator/statepropagatordata.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 8%] Built target colvars_objlib gmake[2]: 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GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/any.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -MF CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/inmemoryserializer.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/loggerbuilder.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -MF CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/mpiinfo.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include 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-Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlistparams.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/pairlistwork.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/dlbtiming.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/gmx_confrms.cpp [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/sm_distance.cpp [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include 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energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o options/CMakeFiles/options.dir/abstractoption.cpp.o options/CMakeFiles/options.dir/abstractsection.cpp.o options/CMakeFiles/options.dir/basicoptions.cpp.o options/CMakeFiles/options.dir/behaviorcollection.cpp.o options/CMakeFiles/options.dir/filenameoption.cpp.o options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o options/CMakeFiles/options.dir/options.cpp.o options/CMakeFiles/options.dir/optionsassigner.cpp.o options/CMakeFiles/options.dir/optionsection.cpp.o options/CMakeFiles/options.dir/optionsvisitor.cpp.o options/CMakeFiles/options.dir/timeunitmanager.cpp.o options/CMakeFiles/options.dir/treesupport.cpp.o pulling/CMakeFiles/pulling.dir/output.cpp.o pulling/CMakeFiles/pulling.dir/pull.cpp.o pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_openmpi_d.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/share/template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/share/template/template.cpp [100%] Linking CXX executable ../../bin/gmx_openmpi_d cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_openmpi_d -Wl,-rpath,/usr/lib64/openmpi/lib: ../../lib/libgromacs_openmpi_d.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/openmpi/lib ../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n openmpi + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; unset MPI_MAN; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset _LMFILES_; unset LOADEDMODULES; unset CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.oT3RsR + umask 022 + cd /builddir/build/BUILD/gromacs-2024.3-build + '[' /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT ++ dirname /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT + mkdir -p /builddir/build/BUILD/gromacs-2024.3-build + mkdir /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2024.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial + DESTDIR=/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/README -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/top -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/top/nsfactor.dat -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/top/bonds.dlg -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/top/ffG45a3.itp -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa.itp -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/top/atom_nom.tbl -- Installing: 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/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-config.cmake -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/gmxapi.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/gmxapicompat.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/mpi -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/mpi/gmxapi_mpi.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/context.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/session.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/exceptions.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/system.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/md.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/session -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/session/resources.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/gromacsfwd.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/md -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/md/mdmodule.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/md/mdsignals.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/compat -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/compat/mdparams.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/compat/tpr.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/status.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/version.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/mpi/resourceassignment.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0" to "" -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/nblib.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/integrator.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/molecules.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/util -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/util/util.hpp -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/util/traits.hpp -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/util/setup.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/particletype.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/particlesequencer.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/basicdefinitions.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/gmxcalculatorcpu.h -- Installing: 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/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_calculate_splines.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/bin/gmx -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/bin/gmx" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/bin -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/bin/gmx-completion-gmx.bash -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Installing: 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Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Installing: 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/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd mpich + DESTDIR=/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/top -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + popd + test -n mpich + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd openmpi + DESTDIR=/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: 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/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_calculate_splines.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx_openmpi -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx_openmpi" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/openmpi/bin -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: 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-- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + popd + test -n openmpi + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; unset MPI_MAN; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset _LMFILES_; unset LOADEDMODULES; unset CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial_d + DESTDIR=/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: 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/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/topology/block.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/restraint -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/restraint/restraintpotential.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/math -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/math/vec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/math/do_fit.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/math/functions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/math/utilities.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/math/units.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/mdtypes -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/mdtypes/inputrec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/mdtypes/md_enums.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libgmxapi_d.so.0.4.0 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libgmxapi_d.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libgmxapi_d.so.0.4.0" to "" -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libgmxapi_d.so -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi.cmake -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-release.cmake -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-config-version.cmake -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-config.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/gmxapi.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/gmxapicompat.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/mpi -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/mpi/gmxapi_mpi.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/context.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/session.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/exceptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/system.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/md.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/session -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/session/resources.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/gromacsfwd.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/md -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/md/mdmodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/md/mdsignals.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/compat -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/compat/mdparams.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/compat/tpr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/status.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/version.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gmxapi/mpi/resourceassignment.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/nblib.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/integrator.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/molecules.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/util -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/util/util.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/util/traits.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/util/setup.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/particletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/particlesequencer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/basicdefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/gmxcalculatorcpu.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/vector.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/simulationstate.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/nbnxmsetuphelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/interactions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/exception.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/box.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/listed_forces -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/listed_forces/definitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/listed_forces/bondtypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/listed_forces/calculator.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/topology.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/kerneloptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/nblib/tpr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libgromacs_d.so.9.0.0 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libgromacs_d.so.9 -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/libgromacs_d.so -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/lib64/pkgconfig/libgromacs_d.pc -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/cmake/gromacs_d/libgromacs.cmake -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/cmake/gromacs_d/libgromacs-release.cmake -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs_d-config.cmake -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs_d-config-version.cmake -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs-hints_d.cmake -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/bin/gmx_d -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/bin/gmx_d" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/bin -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/bin/gmx-completion-gmx_d.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 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-- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + popd + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd mpich_d + DESTDIR=/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + popd + test -n mpich + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd openmpi_d + DESTDIR=/builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + popd + test -n openmpi + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; unset MPI_MAN; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset _LMFILES_; unset LOADEDMODULES; unset CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/doc/gromacs + install -pm 644 AUTHORS COPYING README /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/doc/gromacs + install -cpm 644 serial/docs/manual/gromacs.pdf /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/doc/gromacs/manual.pdf + install -cpm 644 /builddir/build/SOURCES/gromacs-README.fedora /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT/usr/share/doc/gromacs/README.fedora + pushd /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT ~/build/BUILD/gromacs-2024.3-build/BUILDROOT ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + rm .//usr/bin/GMXRC .//usr/bin/GMXRC.bash .//usr/bin/GMXRC.csh .//usr/bin/GMXRC.zsh + rm .//usr/lib64/mpich/bin/GMXRC .//usr/lib64/mpich/bin/GMXRC.bash .//usr/lib64/mpich/bin/GMXRC.csh .//usr/lib64/mpich/bin/GMXRC.zsh .//usr/lib64/openmpi/bin/GMXRC .//usr/lib64/openmpi/bin/GMXRC.bash .//usr/lib64/openmpi/bin/GMXRC.csh .//usr/lib64/openmpi/bin/GMXRC.zsh .//usr/lib64/mpich/bin/demux.pl .//usr/lib64/mpich/bin/xplor2gmx.pl .//usr/lib64/openmpi/bin/demux.pl .//usr/lib64/openmpi/bin/xplor2gmx.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/demux.pl .//usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/xplor2gmx.pl .//usr/bin/g_xplor2gmx.pl + mkdir -p .//usr/share/bash-completion/completions + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx.bash + rm .//usr/bin/gmx-completion-gmx.bash + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion.bash .//usr/lib64/mpich/bin/gmx-completion-gmx_mpich.bash .//usr/lib64/mpich/bin/gmx-completion-gmx_mpich_d.bash .//usr/lib64/mpich/bin/gmx-completion.bash .//usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi.bash .//usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi_d.bash .//usr/lib64/openmpi/bin/gmx-completion.bash + /usr/bin/find-debuginfo -j48 --strict-build-id -m -i --build-id-seed 2024.3-1.fc42 --unique-debug-suffix -2024.3-1.fc42.x86_64 --unique-debug-src-base gromacs-2024.3-1.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 find-debuginfo: starting Extracting debug info from 11 files DWARF-compressing 11 files sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/gromacs-2024.3-1.fc42.x86_64 cpio: mpich/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/g_demux.pl from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/bin/g_xplor2gmx.pl from /usr/bin/env perl to #!/usr/bin/perl *** WARNING: ./usr/src/debug/gromacs-2024.3-1.fc42.x86_64/src/gromacs/gpu_utils/nvshmem_utils.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/gromacs-2024.3-1.fc42.x86_64/src/gromacs/gpu_utils/nvshmem_utils.h is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j48 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j48 /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT Scanned 320 directories and 2659 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/gromacs-2024.3-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.EbmF5M + umask 022 + cd /builddir/build/BUILD/gromacs-2024.3-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2024.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial + [[ '' = openmpi ]] + /usr/bin/cmake --build redhat-linux-build -j48 --verbose --target check Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 check /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 check gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/CMakeFiles 92 /usr/bin/gmake -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/CMakeFiles/gmx_objlib.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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"--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/DependInfo.cmake "--color=" Dependencies file "src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/CMakeFiles/gmx_objlib.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target energyanalysis Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target scanner Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target linearalgebra gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target mdrun_objlib Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". [ 0%] Generating release version information Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.13 -D PROJECT_VERSION=2024.3-Fedora42 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora42 -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". [ 0%] Building CXX object src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/external/googletest/googletest && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_LANG_CXX11 -Dgtest_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/src/gtest-all.cc Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". [ 0%] Built target gmx_objlib [ 0%] Built target energyanalysis Consolidate compiler generated dependencies of target thread_mpi [ 0%] Built target scanner gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build Consolidate compiler generated dependencies of target options [ 1%] Built target linearalgebra [ 1%] Built target mdrun_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/options/CMakeFiles/options.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 1%] Built target release-version-info Consolidate compiler generated dependencies of target clFFT gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build [ 3%] Built target thread_mpi Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". [ 3%] Built target options gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Consolidate compiler generated dependencies of target pulling [ 4%] Built target clFFT gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/pulling/CMakeFiles/pulling.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Consolidate compiler generated dependencies of target colvars_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build [ 4%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/colvars_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". [ 6%] Built target colvars_objlib Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". 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Consolidate compiler generated dependencies of target taskassignment gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 6%] Built target taskassignment Consolidate compiler generated dependencies of target modularsimulator gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 7%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target libgromacs gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 57%] Built target libgromacs /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/depend /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/box.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/topology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/virials.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". [ 57%] Built target gmx /usr/bin/gmake -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/tests/CMakeFiles/gmxtests.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target gmxapi gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'tests/CMakeFiles/gmxtests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/gmxapi/CMakeFiles/gmxapi.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' Consolidate compiler generated dependencies of target nblib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 57%] Built target gmxapi [ 57%] Built target gmxtests [ 58%] Built target nblib /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake "--color=" Dependencies file "api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/compiler_depend.internal". Dependencies file "api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target methane-water-integration Consolidate compiler generated dependencies of target argon-forces-integration gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/methane-water-integration.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 58%] Built target methane-water-integration [ 58%] Built target argon-forces-integration [ 59%] Linking CXX shared library ../../../../lib/libgtest.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.13.0 -o ../../../../lib/libgtest.so.1.13.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o" cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgtest.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 59%] Built target gtest /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 59%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -D_GNU_SOURCE=1 -Dgmock_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -MD -MT src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/src/gmock-all.cc [ 59%] Linking CXX shared library ../../../../lib/libgmock.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.13.0 -o ../../../../lib/libgmock.so.1.13.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o" -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libgtest.so.1.13.0 cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgmock.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 59%] Built target 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -MF CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o.d -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/tinyxml2/tinyxml2.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/test_device.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 61%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi_printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata_xml.cpp.o CMakeFiles/testutils.dir/simulationdatabase.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/test_device.cpp.o CMakeFiles/testutils.dir/test_hardware_environment.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/topologyhelpers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/trajectoryreader.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 61%] Built target testutils /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build /usr/bin/gmake 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directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -MF CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o.d -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/mpitest.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/energyreader.cpp [ 63%] Building CXX object src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 63%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o [ 63%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o [ 63%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o [ 63%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o [ 63%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfitting.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmminputgenerator.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarspreprocessor.cpp [ 63%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o [ 63%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o -MF CMakeFiles/utility-test.dir/alignedallocator.cpp.o.d -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/alignedallocator.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o -MF CMakeFiles/listed_forces-test.dir/bonded.cpp.o.d -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/bonded.cpp [ 64%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -MF CMakeFiles/nbnxm-test.dir/exclusions.cpp.o.d -o CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/exclusions.cpp [ 64%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/mock_helptopic.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o -MF CMakeFiles/testutils-test.dir/interactivetest.cpp.o.d -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/interactivetest.cpp [ 64%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -MF CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 64%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o [ 64%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o [ 64%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/haloexchange_mpi.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -MF CMakeFiles/applied_forces-test.dir/electricfield.cpp.o.d -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/tests/electricfield.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fft/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o -MF CMakeFiles/fft-test.dir/fft.cpp.o.d -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests/fft.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 64%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o [ 64%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o [ 64%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -MF CMakeFiles/hardware-test.dir/cpuinfo.cpp.o.d -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/cpuinfo.cpp [ 64%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -MF CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o.d -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/accessor_policy.cpp [ 64%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o [ 64%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o [ 64%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o [ 64%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o -MF CMakeFiles/restraintpotential-test.dir/manager.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/tests/manager.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o -MF CMakeFiles/pbcutil-test.dir/com.cpp.o.d -o CMakeFiles/pbcutil-test.dir/com.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/com.cpp [ 64%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o [ 64%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -MF CMakeFiles/random-test.dir/exponentialdistribution.cpp.o.d -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/exponentialdistribution.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o -MF CMakeFiles/table-test.dir/splinetable.cpp.o.d -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/tests/splinetable.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/tests/usergpuids.cpp [ 65%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o [ 65%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o [ 65%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -MF CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o.d -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 65%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o [ 65%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o -MF CMakeFiles/gmxana-test.dir/entropy.cpp.o.d -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/entropy.cpp [ 65%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o [ 65%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o -MF CMakeFiles/timing-test.dir/timing.cpp.o.d -o CMakeFiles/timing-test.dir/timing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/tests/timing.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o -MF CMakeFiles/pull-test.dir/pull.cpp.o.d -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/tests/pull.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/abstractoptionstorage.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/editconf.cpp [ 64%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o [ 65%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 65%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o -MF CMakeFiles/simd-test.dir/base.cpp.o.d -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/base.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o -MF CMakeFiles/correlations-test.dir/autocorr.cpp.o.d -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 65%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 65%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o [ 65%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/enerdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/enerdata.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o.d -o 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects 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-DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o -MF CMakeFiles/fileio-test.dir/checkpoint.cpp.o.d -o CMakeFiles/fileio-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/checkpoint.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o -MF CMakeFiles/coordinateio-test.dir/builder.cpp.o.d -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/builder.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/exclusions.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/haloexchange_mpi.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests/fft.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 65%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_availability.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmebsplinetest.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 65%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o -MF CMakeFiles/mdspan-test.dir/extents.cpp.o.d -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/extents.cpp [ 65%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/helpwriting.cpp.o -MF CMakeFiles/tool-test.dir/helpwriting.cpp.o.d -o CMakeFiles/tool-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/helpwriting.cpp [ 65%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_chi.cpp [ 65%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o [ 65%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/energycomparison.cpp [ 67%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" 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src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmtopologypreprocessor.cpp [ 67%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o -MF CMakeFiles/random-test.dir/gammadistribution.cpp.o.d -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/gammadistribution.cpp [ 67%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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67%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 67%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o" "CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 67%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o -MF CMakeFiles/correlations-test.dir/expfit.cpp.o.d -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/expfit.cpp [ 67%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_stream_manager.cpp [ 68%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/restraintpotential-test.dir/manager.cpp.o" "CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/restraintpotential-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 68%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o [ 68%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 68%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 68%] Linking CXX executable ../../../../bin/timing-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/timing-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/timing-test.dir/timing.cpp.o" "CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/timing-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 68%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvars.cpp [ 68%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 68%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 68%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 68%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 [ 68%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o" "CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libtestutils.a ../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/extensions.cpp [ 68%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o -MF CMakeFiles/math-test.dir/boxmatrix.cpp.o.d -o CMakeFiles/math-test.dir/boxmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/boxmatrix.cpp [ 68%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o -MF CMakeFiles/simd-test.dir/scalar.cpp.o.d -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar.cpp [ 68%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -MF CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o.d -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp [ 68%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o -MF CMakeFiles/mdlib-test.dir/constr.cpp.o.d -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constr.cpp [ 68%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_mindist.cpp [ 68%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/applied_forces-test.dir/electricfield.cpp.o" "CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 68%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernel_test.cpp [ 68%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 68%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 68%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a "CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o" "CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 68%] Built target onlinehelp-test-shared [ 68%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 [ 68%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects 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-DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -MF CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 68%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib_test_infrastructure.dir/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/nblib_test_infrastructure.dir/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/nblib_test_infrastructure.dir/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 70%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 [ 70%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/compat-test.dir/mp11.cpp.o" "CMakeFiles/compat-test.dir/pointers.cpp.o" "CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/compat-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernel_test.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 70%] Built target utility-mpi-test [ 70%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o -MF CMakeFiles/pbcutil-test.dir/mshift.cpp.o.d -o CMakeFiles/pbcutil-test.dir/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/mshift.cpp [ 71%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmoptions.cpp [ 71%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock 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CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingforceprovider.cpp [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/moduletest.cpp [ 71%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -MF CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o.d -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 71%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o" "CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o ../CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o ../CMakeFiles/taskassignment.dir/findallgputasks.cpp.o ../CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o ../CMakeFiles/taskassignment.dir/resourcedivision.cpp.o ../CMakeFiles/taskassignment.dir/taskassignment.cpp.o ../CMakeFiles/taskassignment.dir/usergpuids.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/arrayref.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 71%] Built target restraintpotential-test [ 71%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o -MF CMakeFiles/fileio-test.dir/filemd5.cpp.o.d -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/filemd5.cpp [ 71%] Linking CXX executable ../../../../bin/domdec-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o" "CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 71%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genion.cpp [ 71%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genrestr.cpp [ 71%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/domdec-test.dir/hashedmap.cpp.o" "CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o" "CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 71%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarsoptions.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmegathertest.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 71%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gen_maxwell_velocities.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 71%] Built target timing-test [ 72%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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../../../lib/libnblib_test_infrastructure.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 72%] Built target nblib_test_infrastructure [ 72%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx1-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 72%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/fft-test.dir/fft.cpp.o" "CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fft-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o cd 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o -MF CMakeFiles/simd-test.dir/scalar_math.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar_math.cpp [ 72%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o -MF CMakeFiles/simd-test.dir/simd.cpp.o.d -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd.cpp [ 72%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o -MF CMakeFiles/tool-test.dir/trjconv.cpp.o.d -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/trjconv.cpp [ 72%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx2-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 72%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o -MF CMakeFiles/hardware-test.dir/device_management.cpp.o.d -o CMakeFiles/hardware-test.dir/device_management.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/device_management.cpp [ 72%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx3-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulatorcomparison.cpp [ 72%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o -MF CMakeFiles/fileio-test.dir/filetypes.cpp.o.d -o CMakeFiles/fileio-test.dir/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/filetypes.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 72%] Built target compat-test [ 72%] Linking CXX executable ../../../../../bin/nonbonded-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nonbonded-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o" "CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/nonbonded-fep-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.9.0.0 -lm ../../../../../lib/libgmock.so.1.13.0 ../../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 72%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/mdspan.cpp [ 72%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbc.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/pbc.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/device_management.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 72%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o -MF CMakeFiles/topology-test.dir/idef.cpp.o.d -o CMakeFiles/topology-test.dir/idef.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/idef.cpp [ 72%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -MF CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o.d -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 72%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 72%] Built target energyanalysis-test [ 72%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o -MF CMakeFiles/coordinateio-test.dir/register.cpp.o.d -o CMakeFiles/coordinateio-test.dir/register.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/register.cpp [ 73%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/checkpointdata.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 73%] Built target domdec-test [ 73%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o -MF CMakeFiles/random-test.dir/threefry.cpp.o.d -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/threefry.cpp [ 73%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o -MF CMakeFiles/math-test.dir/densityfit.cpp.o.d -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/densityfit.cpp [ 73%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/booltype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarsforceprovider.cpp [ 73%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernelsetup.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 73%] Built target domdec-mpi-test [ 73%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o -MF CMakeFiles/math-test.dir/dofit.cpp.o.d -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/dofit.cpp [ 75%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gmxana-test.dir/entropy.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o" "CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxana-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 75%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/pbcenums.cpp [ 75%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/table-test.dir/splinetable.cpp.o" "CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/table-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 75%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -MF CMakeFiles/fileio-test.dir/mrcserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/mrcserializer.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernelsetup.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 75%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/terminationhelper.cpp [ 75%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 75%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/filenameoptionmanager.cpp [ 75%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/index.cpp [ 75%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_floatingpoint_util.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 76%] Built target taskassignment-test [ 76%] Building CXX object 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 77%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/option.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 77%] Built target pull-test [ 77%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectorycomparison.cpp [ 77%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o" "CMakeFiles/mdspan-test.dir/extents.cpp.o" "CMakeFiles/mdspan-test.dir/extensions.cpp.o" "CMakeFiles/mdspan-test.dir/layouts.cpp.o" "CMakeFiles/mdspan-test.dir/mdspan.cpp.o" "CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdspan-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 77%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o -MF CMakeFiles/topology-test.dir/mtop.cpp.o.d -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/mtop.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesolvetest.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Linking CXX executable ../../../../../bin/density_fitting_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/density_fitting_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/density_fitting_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.9.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgtest.so.1.13.0 [ 77%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake [ 77%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biassharing.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a "CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 77%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include 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CMakeFiles/simd-test.dir/simd_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp [ 77%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/testutils-test.dir/interactivetest.cpp.o" "CMakeFiles/testutils-test.dir/refdata_tests.cpp.o" "CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o" "CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o" "CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libtestutils.a ../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 [ 77%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/hardware-test.dir/cpuinfo.cpp.o" "CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/device_management.cpp.o" "CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/hardware-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 77%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pbcutil-test.dir/com.cpp.o" "CMakeFiles/pbcutil-test.dir/mshift.cpp.o" "CMakeFiles/pbcutil-test.dir/pbc.cpp.o" "CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o" "CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pbcutil-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 77%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Built target pdb2gmx1-test [ 77%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/grompp_directives.cpp [ 77%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o -MF CMakeFiles/awh-test.dir/biasstate.cpp.o.d -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biasstate.cpp [ 77%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o -MF CMakeFiles/simd-test.dir/simd_memory.cpp.o.d -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_memory.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o -MF CMakeFiles/utility-test.dir/bitmask32.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask32.cpp [ 77%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o -MF CMakeFiles/topology-test.dir/symtab.cpp.o.d -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/symtab.cpp [ 78%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o -MF CMakeFiles/tool-test.dir/convert-tpr.cpp.o.d -o CMakeFiles/tool-test.dir/convert-tpr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/convert-tpr.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -MF CMakeFiles/random-test.dir/uniformintdistribution.cpp.o.d -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/uniformintdistribution.cpp [ 78%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -MF CMakeFiles/coordinateio-test.dir/setatoms.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setatoms.cpp [ 78%] Linking CXX executable ../../../../bin/nbnxm-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nbnxm-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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../../../../lib/libgtest.so.1.13.0 [ 78%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 78%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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executable ../../../../../bin/colvars_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/colvars_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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"CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/qmmm_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.9.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 79%] Built target nonbonded-fep-test [ 79%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp [ 79%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp [ 79%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -MF CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o.d -o CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/bias_fep_lambda_state.cpp [ 79%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/functions.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp:42: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o -MF CMakeFiles/topology-test.dir/topsort.cpp.o.d -o CMakeFiles/topology-test.dir/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/topsort.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/expanded.cpp.o -MF CMakeFiles/mdlib-test.dir/expanded.cpp.o.d -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/expanded.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 80%] Built target density_fitting_applied_forces-test [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/options-test.dir/optionsassigner.cpp.o.d -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/optionsassigner.cpp [ 80%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/listed_forces-test.dir/bonded.cpp.o" "CMakeFiles/listed_forces-test.dir/pairs.cpp.o" "CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o" "CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/listed_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -MF CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o.d -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.cpp [ 80%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_buffer.cpp [ 80%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o -MF CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o.d -o CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/multipletimestepping.cpp [ 80%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o -MF CMakeFiles/selection-test.dir/nbsearch.cpp.o.d -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/nbsearch.cpp [ 80%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_vector_operations.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 80%] Built target mdspan-test [ 80%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o -MF CMakeFiles/fileio-test.dir/readinp.cpp.o.d -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/readinp.cpp [ 80%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/massrepartitioning.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 80%] Built target pdb2gmx2-test [ 81%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/readir.cpp [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -MF CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o.d -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/uniformrealdistribution.cpp [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o -MF CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o.d -o CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/freeenergyparameters.cpp [ 81%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/tool-test.dir/dump.cpp.o" "CMakeFiles/tool-test.dir/helpwriting.cpp.o" "CMakeFiles/tool-test.dir/make_ndx.cpp.o" "CMakeFiles/tool-test.dir/report_methods.cpp.o" "CMakeFiles/tool-test.dir/trjconv.cpp.o" "CMakeFiles/tool-test.dir/convert-tpr.cpp.o" "CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/tool-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o -MF CMakeFiles/math-test.dir/gausstransform.cpp.o.d -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/gausstransform.cpp [ 81%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o -MF CMakeFiles/awh-test.dir/friction_metric.cpp.o.d -o CMakeFiles/awh-test.dir/friction_metric.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/friction_metric.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_buffer.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 81%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -MF CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setstarttime.cpp [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd 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-fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/solvate.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 81%] Built target hardware-test [ 81%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" 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Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 81%] Built target nbnxm-test [ 81%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 81%] Built target table-test [ 81%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o -MF CMakeFiles/utility-test.dir/bitmask64.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask64.cpp [ 81%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -MF CMakeFiles/coordinateio-test.dir/settimestep.cpp.o.d -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/settimestep.cpp [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestdata.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 81%] Built target pbcutil-test In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pme.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 81%] Built target gmxana-test [ 81%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -MF CMakeFiles/coordinateio-test.dir/testmodule.cpp.o.d -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/testmodule.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o -MF CMakeFiles/selection-test.dir/selectioncollection.cpp.o.d -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/selectioncollection.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/random-test.dir/exponentialdistribution.cpp.o" "CMakeFiles/random-test.dir/gammadistribution.cpp.o" "CMakeFiles/random-test.dir/normaldistribution.cpp.o" "CMakeFiles/random-test.dir/seed.cpp.o" "CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o" "CMakeFiles/random-test.dir/threefry.cpp.o" "CMakeFiles/random-test.dir/uniformintdistribution.cpp.o" "CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o" "CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/random-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_event_ocl.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_event.h:117, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gpueventsynchronizer.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/gpueventsynchronizer.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o -MF CMakeFiles/options-test.dir/treesupport.cpp.o.d -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/treesupport.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 83%] Built target colvars_applied_forces-test [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 83%] Building CXX object api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o -MF CMakeFiles/utility-test.dir/bitmask128.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask128.cpp [ 83%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/topology-test.dir/atoms.cpp.o" "CMakeFiles/topology-test.dir/exclusionblocks.cpp.o" "CMakeFiles/topology-test.dir/idef.cpp.o" "CMakeFiles/topology-test.dir/index.cpp.o" "CMakeFiles/topology-test.dir/mtop.cpp.o" "CMakeFiles/topology-test.dir/symtab.cpp.o" "CMakeFiles/topology-test.dir/topsort.cpp.o" "CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/topology-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 83%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/DependInfo.cmake "--color=" [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o -MF CMakeFiles/math-test.dir/optimization.cpp.o.d -o CMakeFiles/math-test.dir/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/optimization.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 83%] Building CXX object api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o -MF CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o.d -o CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/tpr.cpp [ 83%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 83%] Built target listed_forces-test [ 83%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -MF CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o.d -o CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/parrinellorahman.cpp [ 83%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 [ 83%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/particletype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settle.cpp [ 83%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/molecules.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 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CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 84%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CMakeFiles/math-test.dir/paddedvector.cpp.o.d -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/paddedvector.cpp [ 84%] Linking CXX executable ../../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed 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api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o -MF CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/nbnxmsetup.cpp [ 85%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/topology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/topology.cpp.o -MF CMakeFiles/nblib-setup-test.dir/topology.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/topology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/topology.cpp [ 85%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/virials.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/virials.cpp.o -MF CMakeFiles/nblib-setup-test.dir/virials.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/virials.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/virials.cpp [ 85%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /usr/bin/gmake -f api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/build.make api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/depend /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/coordinateio-test.dir/builder.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o" "CMakeFiles/coordinateio-test.dir/register.cpp.o" "CMakeFiles/coordinateio-test.dir/requirements.cpp.o" "CMakeFiles/coordinateio-test.dir/setatoms.cpp.o" "CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o" "CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o" "CMakeFiles/coordinateio-test.dir/settimestep.cpp.o" "CMakeFiles/coordinateio-test.dir/testmodule.cpp.o" "CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/coordinateio-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/build.make api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 85%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/bondtypes.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 85%] Built target testutils-test [ 85%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/gmxcalculator.cpp [ 85%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/helpers.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/nbnxmsetup.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ /usr/bin/gmake -f api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/build.make api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/util/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/util/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/build.make api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 85%] Building CXX object api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/setup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/util/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/util/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/util/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/setup.cpp.o -MF CMakeFiles/nblib-util-test.dir/setup.cpp.o.d -o CMakeFiles/nblib-util-test.dir/setup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/util/tests/setup.cpp /usr/bin/gmake -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake "--color=" [ 85%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/listedtesthelpers.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-integration-test.dir/nbkernelsystem.cpp.o -MF CMakeFiles/nblib-integration-test.dir/nbkernelsystem.cpp.o.d -o CMakeFiles/nblib-integration-test.dir/nbkernelsystem.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/nbkernelsystem.cpp [ 86%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/kernels.cpp /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 86%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -MF CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/mdmodulesnotifier.cpp [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestrunners.cpp [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o -MF CMakeFiles/mdlib-test.dir/shake.cpp.o.d -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/shake.cpp [ 86%] Building CXX object api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/util/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/util/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/util/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/nblib-util-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/nblib-util-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 86%] Built target random-test [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -MF CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o.d -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/fixedcapacityvector.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 86%] Built target topology-test [ 86%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -MF CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 86%] Linking CXX executable ../../../bin/nblib-tpr-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-tpr-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o" "CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-tpr-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libmdrun_test_infrastructure.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake "--color=" [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlineparser.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 86%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 86%] Building CXX object api/nblib/tests/CMakeFiles/nblib-integration-test.dir/simstate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" 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api/nblib/tests/CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o" "CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o" "CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o" "CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o" "CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o" "CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o" "CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gpu_utils-test 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/nblib-setup-test.dir/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -MF CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o.d -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 86%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/fileio-test.dir/checkpoint.cpp.o" "CMakeFiles/fileio-test.dir/confio.cpp.o" "CMakeFiles/fileio-test.dir/filemd5.cpp.o" "CMakeFiles/fileio-test.dir/filetypes.cpp.o" "CMakeFiles/fileio-test.dir/mrcserializer.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o" "CMakeFiles/fileio-test.dir/readinp.cpp.o" "CMakeFiles/fileio-test.dir/timecontrol.cpp.o" "CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o" "CMakeFiles/fileio-test.dir/tngio.cpp.o" "CMakeFiles/fileio-test.dir/xvgio.cpp.o" "CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fileio-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o.d -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 86%] Linking CXX executable ../../../../bin/nblib-util-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/util/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-util-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpformat.cpp [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 86%] Linking CXX executable ../../../bin/nblib-integrator-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-integrator-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-integrator-test.dir/integrator.cpp.o" "CMakeFiles/nblib-integrator-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-integrator-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o -MF CMakeFiles/math-test.dir/vectypes.cpp.o.d -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/vectypes.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpwritercontext.cpp /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/utility-test.dir/listoflists.cpp.o.d -o CMakeFiles/utility-test.dir/listoflists.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/listoflists.cpp [ 86%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o -MF CMakeFiles/analysisdata-test.dir/average.cpp.o.d -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/average.cpp [ 88%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" 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CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o" "CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o" "CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o" "CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 89%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/conversions.cpp [ 89%] Linking CXX executable ../../../bin/nblib-integration-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-integration-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-integration-test.dir/gmxcalculator.cpp.o" "CMakeFiles/nblib-integration-test.dir/nbkernelsystem.cpp.o" "CMakeFiles/nblib-integration-test.dir/simstate.cpp.o" "CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-integration-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners_gpu.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/DependInfo.cmake "--color=" [ 89%] Linking CXX executable ../../../../bin/onlinehelp-test [ 89%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/angle.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o" "CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/onlinehelp-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/densityfittingmodule.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 89%] Built target awh-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 89%] Built target nblib-util-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 89%] Built target nblib-integrator-test [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o -MF CMakeFiles/utility-test.dir/message_string_collector.cpp.o.d -o CMakeFiles/utility-test.dir/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/message_string_collector.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 89%] Built target gmxpreprocess-test [ 89%] Built target nblib-tpr-test [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -MF CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/helpwriting.cpp [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o -MF CMakeFiles/commandline-test.dir/pargs.cpp.o.d -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/pargs.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 89%] Built target coordinateio-test [ 89%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/shiftforces.cpp [ 89%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o -MF CMakeFiles/utility-test.dir/path.cpp.o.d -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/path.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners_gpu.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -MF CMakeFiles/analysisdata-test.dir/lifetime.cpp.o.d -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/lifetime.cpp [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/interactiveMD.cpp [ 89%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/outputfiles.cpp [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -MF CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/checkpoint.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o [ 91%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o cd 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -MF CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectory_writing.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 91%] Built target mdrunutility-test [ 91%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp [ 91%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/utility-test.dir/strconvert.cpp.o.d -o CMakeFiles/utility-test.dir/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/strconvert.cpp [ 91%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/stringtoenumvalueconverter.cpp [ 91%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/selection-test.dir/indexutil.cpp.o" "CMakeFiles/selection-test.dir/nbsearch.cpp.o" "CMakeFiles/selection-test.dir/poscalc.cpp.o" "CMakeFiles/selection-test.dir/selectioncollection.cpp.o" "CMakeFiles/selection-test.dir/selectionoption.cpp.o" "CMakeFiles/selection-test.dir/toputils.cpp.o" "CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/selection-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -MF CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/initialconstraints.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 91%] Built target fileio-test [ 91%] Built target onlinehelp-test [ 91%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/mimic.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 91%] Built target simd-test [ 91%] Built target mdrunutility-mpi-test [ 92%] 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/distance.cpp [ 92%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o -MF CMakeFiles/utility-test.dir/template_mp.cpp.o.d -o CMakeFiles/utility-test.dir/template_mp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/template_mp.cpp [ 93%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o -MF CMakeFiles/utility-test.dir/textreader.cpp.o.d -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/textreader.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestrunners_gpu.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o -MF CMakeFiles/utility-test.dir/textwriter.cpp.o.d -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/textwriter.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestrunners_gpu.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o -MF CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o.d -o CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multiple_time_stepping.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -MF CMakeFiles/mdrun-test.dir/swapcoords.cpp.o.d -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/swapcoords.cpp [ 93%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o.d -o 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/ewaldsurfaceterm.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/minimize.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/nonbonded_bench.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true 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-MF CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/constantacceleration.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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[ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/orires.cpp [ 94%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o" "CMakeFiles/commandline-test.dir/filenm.cpp.o" "CMakeFiles/commandline-test.dir/pargs.cpp.o" "CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/commandline-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend gmake[3]: Entering directory 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects 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"CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o" "CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake "--color=" /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o" "CMakeFiles/mdlib-test.dir/calcvir.cpp.o" "CMakeFiles/mdlib-test.dir/constr.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/ebin.cpp.o" "CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o" "CMakeFiles/mdlib-test.dir/energyoutput.cpp.o" "CMakeFiles/mdlib-test.dir/expanded.cpp.o" "CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrog.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o" "CMakeFiles/mdlib-test.dir/settle.cpp.o" 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-lmuparser /usr/lib64/libmuparser.so.2.3.4 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/msd.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 95%] Linking CXX executable ../../../../bin/mdrun-output-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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/usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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"--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY 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CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../bin/nblib-setup-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-setup-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-setup-test.dir/box.cpp.o" "CMakeFiles/nblib-setup-test.dir/interactions.cpp.o" "CMakeFiles/nblib-setup-test.dir/particletype.cpp.o" "CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o" "CMakeFiles/nblib-setup-test.dir/molecules.cpp.o" "CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o" "CMakeFiles/nblib-setup-test.dir/topology.cpp.o" "CMakeFiles/nblib-setup-test.dir/virials.cpp.o" "CMakeFiles/nblib-setup-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-setup-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libmdrun_test_infrastructure.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/rdf.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisimtest.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/replicaexchange.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-io-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o" "CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o" "CMakeFiles/mdrun-io-test.dir/grompp.cpp.o" "CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o" "CMakeFiles/mdrun-io-test.dir/termination.cpp.o" "CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pmetest.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-tpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o" "CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 96%] Linking CXX executable ../../../../bin/mdrun-single-rank-algorithms-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-single-rank-algorithms-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-single-rank-algorithms-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make 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CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_basic.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Built target mdrun-modules-test [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pmetest.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Built target mdrun-output-test [ 96%] Linking CXX executable ../../../../bin/minimize-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimize-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_coupling.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_constraints.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/freeenergy.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-multisim-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 96%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/utility-test.dir/alignedallocator.cpp.o" "CMakeFiles/utility-test.dir/arrayref.cpp.o" "CMakeFiles/utility-test.dir/booltype.cpp.o" "CMakeFiles/utility-test.dir/bitmask32.cpp.o" "CMakeFiles/utility-test.dir/bitmask64.cpp.o" "CMakeFiles/utility-test.dir/bitmask128.cpp.o" "CMakeFiles/utility-test.dir/cstringutil.cpp.o" "CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o" "CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o" "CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o" "CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o" "CMakeFiles/utility-test.dir/listoflists.cpp.o" "CMakeFiles/utility-test.dir/logger.cpp.o" "CMakeFiles/utility-test.dir/message_string_collector.cpp.o" "CMakeFiles/utility-test.dir/path.cpp.o" "CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o" "CMakeFiles/utility-test.dir/range.cpp.o" "CMakeFiles/utility-test.dir/strconvert.cpp.o" "CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o" "CMakeFiles/utility-test.dir/stringutil.cpp.o" "CMakeFiles/utility-test.dir/template_mp.cpp.o" "CMakeFiles/utility-test.dir/textreader.cpp.o" "CMakeFiles/utility-test.dir/textwriter.cpp.o" "CMakeFiles/utility-test.dir/typetraits.cpp.o" "CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-MF CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Built target nblib-setup-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/pull.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pull.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pull_rotation.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o" "CMakeFiles/mdrun-test.dir/swapcoords.cpp.o" "CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o" "CMakeFiles/mdrun-test.dir/freezegroups.cpp.o" "CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o" "CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o" "CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/trajectory.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Built target commandline-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/DependInfo.cmake "--color=" [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/unionfind.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulator.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o -MF CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o.d -o CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/virtualsites.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/restraint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/restraint.cpp.o -MF CMakeFiles/gmxapi-test.dir/restraint.cpp.o.d -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests/restraint.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 96%] Built target mdrun-tpi-test [ 96%] Linking CXX executable ../../../../bin/nblib-listed-forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-listed-forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../../bin/nblib-listed-forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libnblib_test_infrastructure.a ../../../../lib/libnblib_gmx.so.0.1.0 ../../../../lib/libtestutils.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a [ 97%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/runner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/workflow/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/workflow/tests 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/workflow/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/workflow/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o -MF 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f api/nblib/CMakeFiles/nblib-tests.dir/build.make api/nblib/CMakeFiles/nblib-tests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib-tests.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/CMakeFiles/nblib-tests.dir/build.make api/nblib/CMakeFiles/nblib-tests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib-tests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 98%] Built target nblib-tests [ 98%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -MF CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o.d -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests/stopsignaler.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 98%] Built target mdrun-io-test [ 98%] Built target mdrun-single-rank-algorithms-test [ 98%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/version.cpp.o -MF CMakeFiles/gmxapi-test.dir/version.cpp.o.d -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests/version.cpp [ 98%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o" "CMakeFiles/math-test.dir/boxmatrix.cpp.o" "CMakeFiles/math-test.dir/coordinatetransformation.cpp.o" "CMakeFiles/math-test.dir/densityfit.cpp.o" "CMakeFiles/math-test.dir/dofit.cpp.o" "CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o" "CMakeFiles/math-test.dir/functions.cpp.o" "CMakeFiles/math-test.dir/gausstransform.cpp.o" "CMakeFiles/math-test.dir/densityfittingforce.cpp.o" "CMakeFiles/math-test.dir/invertmatrix.cpp.o" "CMakeFiles/math-test.dir/matrix.cpp.o" "CMakeFiles/math-test.dir/multidimarray.cpp.o" "CMakeFiles/math-test.dir/neldermead.cpp.o" "CMakeFiles/math-test.dir/optimization.cpp.o" "CMakeFiles/math-test.dir/paddedvector.cpp.o" "CMakeFiles/math-test.dir/vectypes.cpp.o" "CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/math-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 98%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 98%] Linking CXX executable ../../../../bin/mdrun-mpi-pme-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-pme-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o" "CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-pme-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 98%] Built target analysisdata-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 98%] Built target minimize-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 98%] Built target mdlib-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [ 98%] Built target mdrun-multisim-test [100%] Linking CXX executable ../../../../../bin/workflow-details-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/workflow-details-test.dir/workflow.cpp.o" "CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o" ../../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.4.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgmock.so.1.13.0 ../../../../../lib/libgtest.so.1.13.0 [100%] Linking CXX executable ../../../../bin/mdrun-coordination-basic-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-basic-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-basic-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-test [100%] Linking CXX executable ../../../../bin/mdrun-coordination-coupling-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-coupling-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-coupling-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [100%] Linking CXX executable ../../../../bin/mdrun-coordination-constraints-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-constraints-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-constraints-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-mpi-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-non-integrator-test [100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-multisim-replex-test [100%] Linking CXX executable ../../../../bin/gmxapi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gmxapi-test.dir/restraint.cpp.o" "CMakeFiles/gmxapi-test.dir/runner.cpp.o" "CMakeFiles/gmxapi-test.dir/status.cpp.o" "CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o" "CMakeFiles/gmxapi-test.dir/system.cpp.o" "CMakeFiles/gmxapi-test.dir/version.cpp.o" "CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o" ../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.4.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-mpi-pme-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target nblib-listed-forces-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target workflow-details-test [100%] Linking CXX executable ../../../../bin/mdrun-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o" "CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-fep-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target math-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target utility-test [100%] Linking CXX executable ../../../../bin/mdrun-simulator-comparison-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-simulator-comparison-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o" "CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-simulator-comparison-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [100%] Linking CXX executable ../../../../bin/mdrun-rotation-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-rotation-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o" "CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-rotation-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [100%] Linking CXX executable ../../../../bin/mdrun-vsites-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-vsites-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o" "CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-vsites-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-coordination-basic-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-coordination-constraints-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target gmxapi-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-coordination-coupling-test [100%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-equivalence-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.txt --verbose=1 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-equivalence-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [100%] Built target trajectoryanalysis-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-fep-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-rotation-test [100%] Built target mdrun-vsites-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-simulator-comparison-test [100%] Linking CXX executable ../../../../bin/mdrun-pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-pull-test.dir/pull.cpp.o" "CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-pull-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-multisim-replex-equivalence-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target mdrun-pull-test /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/CMakeFiles/tests.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target tests /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build Connected to MAKE jobserver Start 1: GmxapiExternalInterfaceTests 1/89 Test #1: GmxapiExternalInterfaceTests .............. Passed 1.83 sec Start 2: GmxapiInternalInterfaceTests 2/89 Test #2: GmxapiInternalInterfaceTests .............. Passed 0.57 sec Start 3: NbLibListedForcesTests 3/89 Test #3: NbLibListedForcesTests .................... Passed 0.04 sec Start 4: NbLibSamplesTestArgon 4/89 Test #4: NbLibSamplesTestArgon ..................... Passed 0.02 sec Start 5: NbLibSamplesTestMethaneWater 5/89 Test #5: NbLibSamplesTestMethaneWater .............. Passed 0.02 sec Start 6: NbLibUtilTests 6/89 Test #6: NbLibUtilTests ............................ Passed 0.02 sec Start 7: NbLibSetupTests 7/89 Test #7: NbLibSetupTests ........................... Passed 0.03 sec Start 8: NbLibTprTests 8/89 Test #8: NbLibTprTests ............................. Passed 0.04 sec Start 9: NbLibIntegrationTests 9/89 Test #9: NbLibIntegrationTests ..................... Passed 0.02 sec Start 10: NbLibIntegratorTests 10/89 Test #10: NbLibIntegratorTests ...................... Passed 0.02 sec Start 11: TestUtilsUnitTests 11/89 Test #11: TestUtilsUnitTests ........................ Passed 0.03 sec Start 12: TestUtilsMpiUnitTests 12/89 Test #12: TestUtilsMpiUnitTests ..................... Passed 0.02 sec Start 13: UtilityUnitTests 13/89 Test #13: UtilityUnitTests .......................... Passed 0.03 sec Start 14: UtilityMpiUnitTests 14/89 Test #14: UtilityMpiUnitTests ....................... Passed 0.02 sec Start 15: GmxlibTests 15/89 Test #15: GmxlibTests ............................... Passed 0.03 sec Start 16: MdlibUnitTest 16/89 Test #16: MdlibUnitTest ............................. Passed 0.20 sec Start 17: AwhTest 17/89 Test #17: AwhTest ................................... Passed 0.07 sec Start 18: DensityFittingAppliedForcesUnitTest 18/89 Test #18: DensityFittingAppliedForcesUnitTest ....... Passed 0.02 sec Start 19: QMMMAppliedForcesUnitTest 19/89 Test #19: QMMMAppliedForcesUnitTest ................. Passed 0.05 sec Start 20: ColvarsAppliedForcesUnitTest 20/89 Test #20: ColvarsAppliedForcesUnitTest .............. Passed 0.07 sec Start 21: AppliedForcesUnitTest 21/89 Test #21: AppliedForcesUnitTest ..................... Passed 0.02 sec Start 22: ListedForcesTest 22/89 Test #22: ListedForcesTest .......................... Passed 0.04 sec Start 23: NbnxmTests 23/89 Test #23: NbnxmTests ................................ Passed 0.17 sec Start 24: CommandLineUnitTests 24/89 Test #24: CommandLineUnitTests ...................... Passed 0.03 sec Start 25: DomDecTests 25/89 Test #25: DomDecTests ............................... Passed 0.02 sec Start 26: DomDecMpiTests 26/89 Test #26: DomDecMpiTests ............................ Passed 0.02 sec Start 27: EwaldUnitTests 27/89 Test #27: EwaldUnitTests ............................ Passed 0.22 sec Start 28: FFTUnitTests 28/89 Test #28: FFTUnitTests .............................. Passed 0.10 sec Start 29: GpuUtilsUnitTests 29/89 Test #29: GpuUtilsUnitTests ......................... Passed 0.03 sec Start 30: HardwareUnitTests 30/89 Test #30: HardwareUnitTests ......................... Passed 0.04 sec Start 31: MathUnitTests 31/89 Test #31: MathUnitTests ............................. Passed 0.08 sec Start 32: MdrunUtilityUnitTests 32/89 Test #32: MdrunUtilityUnitTests ..................... Passed 0.02 sec Start 33: MdrunUtilityMpiUnitTests 33/89 Test #33: MdrunUtilityMpiUnitTests .................. Passed 0.03 sec Start 34: MDSpanTests 34/89 Test #34: MDSpanTests ............................... Passed 0.02 sec Start 35: MdtypesUnitTest 35/89 Test #35: MdtypesUnitTest ........................... Passed 0.03 sec Start 36: OnlineHelpUnitTests 36/89 Test #36: OnlineHelpUnitTests ....................... Passed 0.02 sec Start 37: OptionsUnitTests 37/89 Test #37: OptionsUnitTests .......................... Passed 0.02 sec Start 38: PbcutilUnitTest 38/89 Test #38: PbcutilUnitTest ........................... Passed 0.02 sec Start 39: RandomUnitTests 39/89 Test #39: RandomUnitTests ........................... Passed 0.03 sec Start 40: RestraintTests 40/89 Test #40: RestraintTests ............................ Passed 0.02 sec Start 41: TableUnitTests 41/89 Test #41: TableUnitTests ............................ Passed 0.08 sec Start 42: TaskAssignmentUnitTests 42/89 Test #42: TaskAssignmentUnitTests ................... Passed 0.02 sec Start 43: GmxTimingTests 43/89 Test #43: GmxTimingTests ............................ Passed 0.02 sec Start 44: TopologyTest 44/89 Test #44: TopologyTest .............................. Passed 0.04 sec Start 45: PullTest 45/89 Test #45: PullTest .................................. Passed 0.02 sec Start 46: SimdUnitTests 46/89 Test #46: SimdUnitTests ............................. Passed 0.05 sec Start 47: CompatibilityHelpersTests 47/89 Test #47: CompatibilityHelpersTests ................. Passed 0.02 sec Start 48: GmxAnaTest 48/89 Test #48: GmxAnaTest ................................ Passed 0.93 sec Start 49: GmxPreprocessTests 49/89 Test #49: GmxPreprocessTests ........................ Passed 0.85 sec Start 50: Pdb2gmx1Test 50/89 Test #50: Pdb2gmx1Test .............................. Passed 0.98 sec Start 51: Pdb2gmx2Test 51/89 Test #51: Pdb2gmx2Test .............................. Passed 1.16 sec Start 52: Pdb2gmx3Test 52/89 Test #52: Pdb2gmx3Test .............................. Passed 1.64 sec Start 53: CorrelationsTest 53/89 Test #53: CorrelationsTest .......................... Passed 0.96 sec Start 54: AnalysisDataUnitTests 54/89 Test #54: AnalysisDataUnitTests ..................... Passed 0.04 sec Start 55: CoordinateIOTests 55/89 Test #55: CoordinateIOTests ......................... Passed 0.07 sec Start 56: TrajectoryAnalysisUnitTests 56/89 Test #56: TrajectoryAnalysisUnitTests ............... Passed 6.49 sec Start 57: EnergyAnalysisUnitTests 57/89 Test #57: EnergyAnalysisUnitTests ................... Passed 0.16 sec Start 58: ToolUnitTests 58/89 Test #58: ToolUnitTests ............................. Passed 1.80 sec Start 59: FileIOTests 59/89 Test #59: FileIOTests ............................... Passed 0.04 sec Start 60: SelectionUnitTests 60/89 Test #60: SelectionUnitTests ........................ Passed 0.15 sec Start 61: MdrunOutputTests 61/89 Test #61: MdrunOutputTests .......................... Passed 0.15 sec Start 62: MdrunModulesTests 62/89 Test #62: MdrunModulesTests ......................... Passed 0.27 sec Start 63: MdrunIOTests 63/89 Test #63: MdrunIOTests .............................. Passed 0.17 sec Start 64: MdrunTestsOneRank 64/89 Test #64: MdrunTestsOneRank ......................... Passed 1.88 sec Start 65: MdrunTestsTwoRanks 65/89 Test #65: MdrunTestsTwoRanks ........................ Passed 1.89 sec Start 66: MdrunSingleRankAlgorithmsTests 66/89 Test #66: MdrunSingleRankAlgorithmsTests ............ Passed 1.58 sec Start 67: Minimize1RankTests 67/89 Test #67: Minimize1RankTests ........................ Passed 0.97 sec Start 68: Minimize2RankTests 68/89 Test #68: Minimize2RankTests ........................ Passed 0.98 sec Start 69: MdrunNonIntegratorTests 69/89 Test #69: MdrunNonIntegratorTests ................... Passed 0.04 sec Start 70: MdrunTpiTests 70/89 Test #70: MdrunTpiTests ............................. Passed 0.59 sec Start 71: MdrunMpiTests 71/89 Test #71: MdrunMpiTests ............................. Passed 0.47 sec Start 72: MdrunMultiSimTests 72/89 Test #72: MdrunMultiSimTests ........................ Passed 0.02 sec Start 73: MdrunMultiSimReplexTests 73/89 Test #73: MdrunMultiSimReplexTests .................. Passed 0.02 sec Start 74: MdrunMultiSimReplexEquivalenceTests 74/89 Test #74: MdrunMultiSimReplexEquivalenceTests ....... Passed 0.02 sec Start 75: MdrunMpi1RankPmeTests 75/89 Test #75: MdrunMpi1RankPmeTests ..................... Passed 0.90 sec Start 76: MdrunMpi2RankPmeTests 76/89 Test #76: MdrunMpi2RankPmeTests ..................... Passed 1.48 sec Start 77: MdrunCoordinationBasicTests1Rank 77/89 Test #77: MdrunCoordinationBasicTests1Rank .......... Passed 0.02 sec Start 78: MdrunCoordinationBasicTests2Ranks 78/89 Test #78: MdrunCoordinationBasicTests2Ranks ......... Passed 0.02 sec Start 79: MdrunCoordinationCouplingTests1Rank 79/89 Test #79: MdrunCoordinationCouplingTests1Rank ....... Passed 0.02 sec Start 80: MdrunCoordinationCouplingTests2Ranks 80/89 Test #80: MdrunCoordinationCouplingTests2Ranks ...... Passed 0.02 sec Start 81: MdrunCoordinationConstraintsTests1Rank 81/89 Test #81: MdrunCoordinationConstraintsTests1Rank .... Passed 0.02 sec Start 82: MdrunCoordinationConstraintsTests2Ranks 82/89 Test #82: MdrunCoordinationConstraintsTests2Ranks ... Passed 0.02 sec Start 83: MdrunFEPTests 83/89 Test #83: MdrunFEPTests ............................. Passed 0.02 sec Start 84: MdrunPullTests 84/89 Test #84: MdrunPullTests ............................ Passed 1.19 sec Start 85: MdrunRotationTests 85/89 Test #85: MdrunRotationTests ........................ Passed 0.16 sec Start 86: MdrunSimulatorComparison 86/89 Test #86: MdrunSimulatorComparison .................. Passed 0.02 sec Start 87: MdrunVirtualSiteTests 87/89 Test #87: MdrunVirtualSiteTests ..................... Passed 0.35 sec Start 88: regressiontests/complex 88/89 Test #88: regressiontests/complex ................... Passed 39.11 sec Start 89: regressiontests/essentialdynamics 89/89 Test #89: regressiontests/essentialdynamics ......... Passed 2.76 sec 100% tests passed, 0 tests failed out of 89 Label Time Summary: GTest = 57.85 sec*proc (85 tests) IntegrationTest = 41.35 sec*proc (28 tests) MpiTest = 28.18 sec*proc (21 tests) QuickGpuTest = 18.19 sec*proc (20 tests) SlowGpuTest = 64.78 sec*proc (16 tests) SlowTest = 13.19 sec*proc (13 tests) UnitTest = 3.31 sec*proc (44 tests) Total Test time (real) = 74.83 sec gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target run-ctest-nophys /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/CMakeFiles/check.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' [100%] Built target check gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build/CMakeFiles 0 gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial/redhat-linux-build' + [[ '' = openmpi ]] + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd mpich + [[ mpich = openmpi ]] + /usr/bin/cmake --build redhat-linux-build -j48 --verbose --target check Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 check /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 check gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/CMakeFiles 87 /usr/bin/gmake -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/external/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/DependInfo.cmake "--color=" Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/compiler_depend.internal". Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/build Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target energyanalysis Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target mdrun_objlib Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target thread_mpi gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build Consolidate compiler generated dependencies of target scanner Dependencies file "src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Consolidate compiler generated dependencies of target linearalgebra /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Nothing to be done for 'src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". [ 0%] Building CXX object src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/external/googletest/googletest && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/src/gtest-all.cc [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.13 -D PROJECT_VERSION=2024.3-Fedora42 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora42 -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [ 0%] Built target mdrun_objlib [ 0%] Built target thread_mpi [ 1%] Built target energyanalysis [ 1%] Built target linearalgebra [ 1%] Built target scanner /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Consolidate compiler generated dependencies of target options Consolidate compiler generated dependencies of target clFFT gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/options/CMakeFiles/options.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 1%] Built target release-version-info gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 2%] Built target options [ 3%] Built target clFFT Consolidate compiler generated dependencies of target pulling gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/pulling/CMakeFiles/pulling.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Consolidate compiler generated dependencies of target colvars_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build [ 3%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/colvars_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". [ 5%] Built target colvars_objlib Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target taskassignment Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 5%] Built target taskassignment Consolidate compiler generated dependencies of target modularsimulator gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 8%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target libgromacs gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 65%] Built target libgromacs [ 65%] Linking CXX static library ../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgtest.a "CMakeFiles/gtest.dir/src/gtest-all.cc.o" /usr/bin/ranlib ../../../../lib/libgtest.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 65%] Built target gtest /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -MD -MT src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/src/gmock-all.cc [ 65%] Linking CXX static library ../../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgmock.a "CMakeFiles/gmock.dir/src/gmock-all.cc.o" /usr/bin/ranlib ../../../../lib/libgmock.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 65%] Built target gmock /usr/bin/gmake -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 65%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/tinyxml2 -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o -MF CMakeFiles/testutils.dir/cmdlinetest.cpp.o.d -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/cmdlinetest.cpp [ 65%] Building CXX object 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/CMakeFiles/testutils.dir/trajectoryreader.cpp.o -MF CMakeFiles/testutils.dir/trajectoryreader.cpp.o.d -o CMakeFiles/testutils.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/trajectoryreader.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/xvgtest.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/test_device.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 67%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi_printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata_xml.cpp.o CMakeFiles/testutils.dir/simulationdatabase.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/test_device.cpp.o CMakeFiles/testutils.dir/test_hardware_environment.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/topologyhelpers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/trajectoryreader.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 67%] Built target testutils /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend /usr/bin/gmake -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend /usr/bin/gmake -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend /usr/bin/gmake -f src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/build.make src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/nonbonded/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend /usr/bin/gmake -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build 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src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build 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"--color=" /usr/bin/gmake -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests 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src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory 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directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build /usr/bin/gmake -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Leaving directory 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Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build /usr/bin/gmake -f src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build.make src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build /usr/bin/gmake -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 67%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 67%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o [ 67%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarspreprocessor.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/energyreader.cpp [ 67%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o /usr/bin/gmake -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -MF CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o.d -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o /usr/bin/gmake -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 67%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 67%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o gmake[3]: Entering directory 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -MF CMakeFiles/applied_forces-test.dir/electricfield.cpp.o.d -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/tests/electricfield.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build [ 67%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o [ 67%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o [ 67%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o [ 67%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmminputgenerator.cpp [ 67%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxlib/nonbonded/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/nonbonded/tests/nb_free_energy.cpp /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -MF CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o.d -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o -MF CMakeFiles/domdec-test.dir/hashedmap.cpp.o.d -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/hashedmap.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o -MF CMakeFiles/utility-test.dir/alignedallocator.cpp.o.d -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/alignedallocator.cpp [ 67%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o -MF CMakeFiles/awh-test.dir/awh_setup.cpp.o.d -o CMakeFiles/awh-test.dir/awh_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/awh_setup.cpp [ 67%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -MF CMakeFiles/hardware-test.dir/cpuinfo.cpp.o.d -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/cpuinfo.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" 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-fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -MF CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 68%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 68%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o [ 68%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -MF CMakeFiles/random-test.dir/exponentialdistribution.cpp.o.d -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/exponentialdistribution.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/enerdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/enerdata.cpp [ 68%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o [ 68%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o -MF CMakeFiles/table-test.dir/splinetable.cpp.o.d -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/tests/splinetable.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o -MF CMakeFiles/pbcutil-test.dir/com.cpp.o.d -o CMakeFiles/pbcutil-test.dir/com.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/com.cpp [ 70%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -MF CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o.d -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/arrayrefwithpadding.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -MF CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o.d -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/abstractoptionstorage.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/tests/usergpuids.cpp [ 70%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o [ 70%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o -MF CMakeFiles/pull-test.dir/pull.cpp.o.d -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/tests/pull.cpp [ 70%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o -MF CMakeFiles/topology-test.dir/atoms.cpp.o.d -o CMakeFiles/topology-test.dir/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/atoms.cpp [ 70%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o [ 70%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o -MF CMakeFiles/timing-test.dir/timing.cpp.o.d -o CMakeFiles/timing-test.dir/timing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/tests/timing.cpp [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o [ 70%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o -MF CMakeFiles/gmxana-test.dir/entropy.cpp.o.d -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/entropy.cpp [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o -MF CMakeFiles/simd-test.dir/base.cpp.o.d -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/base.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/editconf.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 70%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o [ 70%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o [ 70%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/compat-test.dir/mp11.cpp.o.d -o CMakeFiles/compat-test.dir/mp11.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/tests/mp11.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o -MF CMakeFiles/correlations-test.dir/autocorr.cpp.o.d -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/autocorr.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/datatest.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/tests/energyterm.cpp [ 70%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o -MF CMakeFiles/coordinateio-test.dir/builder.cpp.o.d -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/builder.cpp [ 70%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o -MF CMakeFiles/tool-test.dir/dump.cpp.o.d -o CMakeFiles/tool-test.dir/dump.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/dump.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o -MF CMakeFiles/fileio-test.dir/checkpoint.cpp.o.d -o CMakeFiles/fileio-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/checkpoint.cpp [ 70%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o -MF CMakeFiles/selection-test.dir/indexutil.cpp.o.d -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/indexutil.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/exclusions.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/haloexchange_mpi.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests/fft.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 70%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_availability.cpp [ 70%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmebsplinetest.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 70%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o -MF CMakeFiles/mdspan-test.dir/extents.cpp.o.d -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/extents.cpp [ 70%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/helpwriting.cpp.o -MF CMakeFiles/tool-test.dir/helpwriting.cpp.o.d -o CMakeFiles/tool-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/helpwriting.cpp [ 70%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_chi.cpp [ 70%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 70%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/energycomparison.cpp [ 70%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/confio.cpp [ 71%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o -MF CMakeFiles/random-test.dir/gammadistribution.cpp.o.d -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/gammadistribution.cpp [ 71%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -MF CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o.d -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o -MF CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o.d -o CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/observablesreducer.cpp [ 71%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 71%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o" "CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o -MF CMakeFiles/correlations-test.dir/expfit.cpp.o.d -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/expfit.cpp [ 71%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/restraintpotential-test.dir/manager.cpp.o" "CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/restraintpotential-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o -MF CMakeFiles/tool-test.dir/make_ndx.cpp.o.d -o CMakeFiles/tool-test.dir/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/make_ndx.cpp [ 71%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingamplitudelookup.cpp [ 71%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_stream_manager.cpp [ 71%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../bin/timing-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/timing-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/timing-test.dir/timing.cpp.o" "CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/timing-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvars.cpp [ 71%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include 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src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 [ 71%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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/usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o [ 71%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o -MF CMakeFiles/simd-test.dir/scalar.cpp.o.d -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar.cpp [ 71%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -MF CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o.d -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o -MF CMakeFiles/mdlib-test.dir/constr.cpp.o.d -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constr.cpp [ 71%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_mindist.cpp [ 71%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 71%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernel_test.cpp [ 71%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a "CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o" "CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 71%] Built target onlinehelp-test-shared [ 71%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto 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-Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genion.cpp [ 71%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/pull-test.dir/pull.cpp.o" "CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/pulling.dir/output.cpp.o ../CMakeFiles/pulling.dir/pull.cpp.o ../CMakeFiles/pulling.dir/pull_rotation.cpp.o ../CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o ../CMakeFiles/pulling.dir/pullutil.cpp.o ../CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -lmuparser -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o -MF CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o.d -o CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/mockhardwaretopology.cpp [ 71%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -MF CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 71%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o -MF CMakeFiles/awh-test.dir/bias.cpp.o.d -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/bias.cpp [ 71%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/selection-test.dir/nbsearch.cpp.o.d -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/nbsearch.cpp [ 71%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o -MF CMakeFiles/tool-test.dir/report_methods.cpp.o.d -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/report_methods.cpp [ 71%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o -MF CMakeFiles/random-test.dir/normaldistribution.cpp.o.d -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/normaldistribution.cpp [ 71%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -MF CMakeFiles/ewald-test.dir/pmegathertest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmegathertest.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernel_test.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 71%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/compat-test.dir/mp11.cpp.o" "CMakeFiles/compat-test.dir/pointers.cpp.o" "CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/compat-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o" "CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o" "CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/energyanalysis-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o -MF CMakeFiles/pbcutil-test.dir/mshift.cpp.o.d -o CMakeFiles/pbcutil-test.dir/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/mshift.cpp [ 71%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a "CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o" "CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 71%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingforceprovider.cpp [ 71%] Built target mdrunutility-test-shared [ 71%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmoptions.cpp [ 71%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbc.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/pbc.cpp [ 71%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o [ 71%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/moduletest.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -MF CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o.d -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 71%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o" 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/usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o -MF CMakeFiles/utility-test.dir/arrayref.cpp.o.d -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/arrayref.cpp [ 71%] Linking CXX executable ../../../../bin/domdec-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o" "CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -MF CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o.d -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/outputadapters.cpp [ 71%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o -MF CMakeFiles/fileio-test.dir/filemd5.cpp.o.d -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/filemd5.cpp [ 71%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fft/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -MF CMakeFiles/math-test.dir/coordinatetransformation.cpp.o.d -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/coordinatetransformation.cpp [ 71%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_traj.cpp [ 71%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/domdec-test.dir/hashedmap.cpp.o" "CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o" "CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -MF CMakeFiles/topology-test.dir/exclusionblocks.cpp.o.d -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/exclusionblocks.cpp [ 71%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o -MF CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/pinnedmemorychecker.cpp [ 71%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o -MF CMakeFiles/topology-test.dir/idef.cpp.o.d -o CMakeFiles/topology-test.dir/idef.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/idef.cpp [ 71%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarsoptions.cpp [ 71%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o -MF CMakeFiles/mdspan-test.dir/layouts.cpp.o.d -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/layouts.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmegathertest.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 71%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genrestr.cpp [ 71%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/testasserts_tests.cpp [ 71%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 [ 71%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 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../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/fft-test.dir/fft.cpp.o" "CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fft-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o -MF CMakeFiles/simd-test.dir/scalar_util.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar_util.cpp [ 71%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx1-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o -MF CMakeFiles/random-test.dir/seed.cpp.o.d -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/seed.cpp [ 71%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o -MF CMakeFiles/tool-test.dir/trjconv.cpp.o.d -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/trjconv.cpp [ 71%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx3-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 71%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingoptions.cpp [ 71%] Building CXX object src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxlib/nonbonded/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gen_maxwell_velocities.cpp [ 72%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulatorcomparison.cpp [ 72%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o -MF CMakeFiles/mdspan-test.dir/mdspan.cpp.o.d -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/mdspan.cpp [ 72%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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"CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/correlations-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 72%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/pbcenums.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests && 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-isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o -MF CMakeFiles/options-test.dir/filenameoption.cpp.o.d -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/filenameoption.cpp [ 72%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernelsetup.cpp [ 72%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -MF CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o.d -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 72%] Linking CXX executable ../../../../../bin/nonbonded-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nonbonded-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o" "CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/nonbonded-fep-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgmock.a ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernelsetup.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 73%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o -MF CMakeFiles/simd-test.dir/scalar_math.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar_math.cpp [ 73%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o -MF CMakeFiles/topology-test.dir/index.cpp.o.d -o CMakeFiles/topology-test.dir/index.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/index.cpp [ 73%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -DGMX_CP2K=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmforceprovider.cpp [ 73%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -MF CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o.d -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/xvgtest_tests.cpp [ 73%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o -MF CMakeFiles/math-test.dir/densityfit.cpp.o.d -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/densityfit.cpp [ 73%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 [ 74%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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/usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/table-test.dir/splinetable.cpp.o" "CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/table-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 74%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/checkpointdata.cpp [ 74%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 74%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/terminationhelper.cpp [ 74%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesolvetest.cpp [ 75%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o -MF CMakeFiles/awh-test.dir/biasgrid.cpp.o.d -o CMakeFiles/awh-test.dir/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biasgrid.cpp [ 75%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/pbcutil-test.dir/com.cpp.o" "CMakeFiles/pbcutil-test.dir/mshift.cpp.o" "CMakeFiles/pbcutil-test.dir/pbc.cpp.o" "CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o" "CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pbcutil-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 75%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" 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-fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarsforceprovider.cpp [ 77%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmm.cpp [ 77%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 77%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o -MF CMakeFiles/random-test.dir/threefry.cpp.o.d -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/threefry.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesolvetest.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o -MF CMakeFiles/hardware-test.dir/device_management.cpp.o.d -o CMakeFiles/hardware-test.dir/device_management.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/device_management.cpp [ 77%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectorycomparison.cpp [ 77%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../../bin/nbnxm-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nbnxm-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/nbnxm-test.dir/exclusions.cpp.o" "CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o" "CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o" "CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/nbnxm-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 77%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o -MF CMakeFiles/selection-test.dir/selectioncollection.cpp.o.d -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/selectioncollection.cpp [ 77%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/filenameoptionmanager.cpp [ 77%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" 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-isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 77%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o -MF CMakeFiles/topology-test.dir/mtop.cpp.o.d -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/mtop.cpp [ 77%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 77%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/testutils-test.dir/interactivetest.cpp.o" "CMakeFiles/testutils-test.dir/refdata_tests.cpp.o" "CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o" "CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o" "CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_mpich.a ../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../lib/libtestutils.a ../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../lib/libgmock.a ../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 77%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a "CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 77%] Built target analysisdata-test-shared [ 77%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests && 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o -MF CMakeFiles/selection-test.dir/selectionoption.cpp.o.d -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/selectionoption.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o -MF CMakeFiles/simd-test.dir/simd.cpp.o.d -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/device_management.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o -MF CMakeFiles/tool-test.dir/convert-tpr.cpp.o.d -o CMakeFiles/tool-test.dir/convert-tpr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/convert-tpr.cpp [ 77%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o -MF CMakeFiles/awh-test.dir/biassharing.cpp.o.d -o CMakeFiles/awh-test.dir/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biassharing.cpp [ 77%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o" "CMakeFiles/mdspan-test.dir/extents.cpp.o" "CMakeFiles/mdspan-test.dir/extensions.cpp.o" "CMakeFiles/mdspan-test.dir/layouts.cpp.o" "CMakeFiles/mdspan-test.dir/mdspan.cpp.o" "CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdspan-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 77%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -MF CMakeFiles/fileio-test.dir/mrcserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/mrcserializer.cpp [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -MF CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp [ 77%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -MF CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o.d -o CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/position_restraints.cpp [ 77%] Linking CXX executable ../../../../../bin/density_fitting_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/density_fitting_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/density_fitting_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 77%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp:42: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o -MF CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o.d -o CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/energydrifttracker.cpp [ 78%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_buffer.cpp [ 79%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o -MF CMakeFiles/awh-test.dir/biasstate.cpp.o.d -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biasstate.cpp [ 79%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o -MF CMakeFiles/math-test.dir/dofit.cpp.o.d -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/dofit.cpp [ 79%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/hardware-test.dir/cpuinfo.cpp.o" "CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/device_management.cpp.o" "CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/hardware-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 79%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 79%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o -MF CMakeFiles/coordinateio-test.dir/register.cpp.o.d -o CMakeFiles/coordinateio-test.dir/register.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/register.cpp [ 80%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_buffer.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Linking CXX executable ../../../../../bin/colvars_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/colvars_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/colvars_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 80%] Linking CXX executable ../../../../../bin/qmmm_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/qmmm_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/qmmm_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 80%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -MF CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 80%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o -MF CMakeFiles/topology-test.dir/symtab.cpp.o.d -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/symtab.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -MF CMakeFiles/mdlib-test.dir/energyoutput.cpp.o.d -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/energyoutput.cpp [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -MF CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o.d -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 80%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/tool-test.dir/dump.cpp.o" "CMakeFiles/tool-test.dir/helpwriting.cpp.o" "CMakeFiles/tool-test.dir/make_ndx.cpp.o" "CMakeFiles/tool-test.dir/report_methods.cpp.o" "CMakeFiles/tool-test.dir/trjconv.cpp.o" "CMakeFiles/tool-test.dir/convert-tpr.cpp.o" "CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/tool-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io 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CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o /usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include 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CMakeFiles/random-test.dir/uniformintdistribution.cpp.o.d -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/uniformintdistribution.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 80%] Built target mdrun_test_infrastructure [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/options-test.dir/option.cpp.o.d -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/option.cpp [ 80%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/grompp_directives.cpp [ 80%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o -MF CMakeFiles/coordinateio-test.dir/requirements.cpp.o.d -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/requirements.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 80%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o -MF CMakeFiles/options-test.dir/optionsassigner.cpp.o.d -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/optionsassigner.cpp [ 80%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o -MF CMakeFiles/math-test.dir/functions.cpp.o.d -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/functions.cpp [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/uniformrealdistribution.cpp [ 80%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 80%] Built target utility-mpi-test [ 80%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/listed_forces-test.dir/bonded.cpp.o" "CMakeFiles/listed_forces-test.dir/pairs.cpp.o" "CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o" "CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/listed_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 81%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp [ 81%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/coordinateio-test.dir/setatoms.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setatoms.cpp [ 81%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -MF CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o.d -o CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/bias_fep_lambda_state.cpp [ 82%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o.d -o CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/forcebuffers.cpp [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/booltype.cpp.o -MF CMakeFiles/utility-test.dir/booltype.cpp.o.d -o CMakeFiles/utility-test.dir/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/booltype.cpp [ 82%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o -MF CMakeFiles/simd-test.dir/simd_memory.cpp.o.d -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_memory.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 82%] Built target restraintpotential-test [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_vector_operations.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o -MF CMakeFiles/math-test.dir/gausstransform.cpp.o.d -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/gausstransform.cpp [ 82%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include 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CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setbothtime.cpp [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/expanded.cpp.o -MF CMakeFiles/mdlib-test.dir/expanded.cpp.o.d -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/expanded.cpp [ 82%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/random-test.dir/exponentialdistribution.cpp.o" "CMakeFiles/random-test.dir/gammadistribution.cpp.o" "CMakeFiles/random-test.dir/normaldistribution.cpp.o" "CMakeFiles/random-test.dir/seed.cpp.o" "CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o" "CMakeFiles/random-test.dir/threefry.cpp.o" "CMakeFiles/random-test.dir/uniformintdistribution.cpp.o" "CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o" "CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/random-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o -MF CMakeFiles/selection-test.dir/toputils.cpp.o.d -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/toputils.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include 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CMakeFiles/utility-test.dir/bitmask32.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask32.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o -MF CMakeFiles/ewald-test.dir/pme.cpp.o.d -o CMakeFiles/ewald-test.dir/pme.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pme.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/gpueventsynchronizer.cpp [ 82%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o -MF CMakeFiles/options-test.dir/repeatingsection.cpp.o.d -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/repeatingsection.cpp [ 82%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o -MF CMakeFiles/awh-test.dir/friction_metric.cpp.o.d -o CMakeFiles/awh-test.dir/friction_metric.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/friction_metric.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_event_ocl.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_event.h:117, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gpueventsynchronizer.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/gpueventsynchronizer.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 82%] Built target testutils-mpi-test [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/readir.cpp [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -MF CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/fileioxdrserializer.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 82%] Built target timing-test [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o -MF CMakeFiles/fileio-test.dir/tngio.cpp.o.d -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/tngio.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 82%] Built target compat-test In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pme.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 82%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -MF CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setstarttime.cpp [ 82%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/topology-test.dir/atoms.cpp.o" "CMakeFiles/topology-test.dir/exclusionblocks.cpp.o" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o -MF CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/typecasts.cpp [ 82%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o -MF CMakeFiles/fileio-test.dir/xvgio.cpp.o.d -o CMakeFiles/fileio-test.dir/xvgio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/xvgio.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o -MF CMakeFiles/utility-test.dir/bitmask64.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask64.cpp [ 82%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/selection-test.dir/indexutil.cpp.o" "CMakeFiles/selection-test.dir/nbsearch.cpp.o" "CMakeFiles/selection-test.dir/poscalc.cpp.o" "CMakeFiles/selection-test.dir/selectioncollection.cpp.o" "CMakeFiles/selection-test.dir/selectionoption.cpp.o" "CMakeFiles/selection-test.dir/toputils.cpp.o" "CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/selection-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o -MF CMakeFiles/simd-test.dir/simd4.cpp.o.d -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4.cpp [ 82%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o -MF CMakeFiles/options-test.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/timeunitmanager.cpp [ 82%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o" "CMakeFiles/ewald-test.dir/pmegathertest.cpp.o" "CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o" "CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o" "CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o" "CMakeFiles/ewald-test.dir/pme.cpp.o" "CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/ewald-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem 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82%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -MF CMakeFiles/coordinateio-test.dir/settimestep.cpp.o.d -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/settimestep.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o -MF CMakeFiles/math-test.dir/densityfittingforce.cpp.o.d -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/densityfittingforce.cpp [ 82%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o" "CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o" "CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o" "CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o" "CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o" "CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o" "CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gpu_utils-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 82%] Built target domdec-test [ 82%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 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src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrog.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrog.cpp [ 82%] Linking CXX executable ../../../../bin/mdtypes-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdtypes-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdtypes-test.dir/enerdata.cpp.o" "CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o" "CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o" "CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o" "CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o" "CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdtypes-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_floatingpoint.cpp /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 82%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -MF CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/mdmodulesnotifier.cpp [ 82%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o -MF CMakeFiles/utility-test.dir/bitmask128.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask128.cpp [ 82%] Linking CXX executable ../../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/awh-test.dir/awh_setup.cpp.o" "CMakeFiles/awh-test.dir/bias.cpp.o" "CMakeFiles/awh-test.dir/biasgrid.cpp.o" "CMakeFiles/awh-test.dir/biassharing.cpp.o" "CMakeFiles/awh-test.dir/biasstate.cpp.o" "CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o" "CMakeFiles/awh-test.dir/friction_metric.cpp.o" "CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/awh-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o -MF CMakeFiles/math-test.dir/invertmatrix.cpp.o.d -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/invertmatrix.cpp [ 83%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -MF CMakeFiles/coordinateio-test.dir/testmodule.cpp.o.d -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/testmodule.cpp [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/topdirs.cpp [ 85%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -MF CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 85%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 85%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 85%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o -MF CMakeFiles/options-test.dir/treesupport.cpp.o.d -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/treesupport.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o -MF CMakeFiles/math-test.dir/matrix.cpp.o.d -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/matrix.cpp /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpformat.cpp [ 85%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/fileio-test.dir/checkpoint.cpp.o" "CMakeFiles/fileio-test.dir/confio.cpp.o" "CMakeFiles/fileio-test.dir/filemd5.cpp.o" "CMakeFiles/fileio-test.dir/filetypes.cpp.o" "CMakeFiles/fileio-test.dir/mrcserializer.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o" "CMakeFiles/fileio-test.dir/readinp.cpp.o" "CMakeFiles/fileio-test.dir/timecontrol.cpp.o" "CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o" "CMakeFiles/fileio-test.dir/tngio.cpp.o" "CMakeFiles/fileio-test.dir/xvgio.cpp.o" "CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fileio-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o -MF CMakeFiles/simd-test.dir/simd4_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_math.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o -MF CMakeFiles/utility-test.dir/cstringutil.cpp.o.d -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/cstringutil.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 85%] Built target pull-test [ 85%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/coordinateio-test.dir/builder.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o" "CMakeFiles/coordinateio-test.dir/register.cpp.o" "CMakeFiles/coordinateio-test.dir/requirements.cpp.o" "CMakeFiles/coordinateio-test.dir/setatoms.cpp.o" "CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o" "CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o" "CMakeFiles/coordinateio-test.dir/settimestep.cpp.o" "CMakeFiles/coordinateio-test.dir/testmodule.cpp.o" "CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/coordinateio-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 85%] Built target taskassignment-test [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -MF CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o.d -o CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/parrinellorahman.cpp [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o -MF CMakeFiles/mdlib-test.dir/settle.cpp.o.d -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settle.cpp [ 86%] Built target applied_forces-test [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 86%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o" "CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o" "CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o.d -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 86%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath 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../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 86%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o" "CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -MF CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o.d -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/enumerationhelpers.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 86%] Built target correlations-test [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o -MF CMakeFiles/math-test.dir/multidimarray.cpp.o.d -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/multidimarray.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 86%] Built target mdspan-test [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/settletestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestdata.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o -MF CMakeFiles/math-test.dir/neldermead.cpp.o.d -o CMakeFiles/math-test.dir/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/neldermead.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 86%] Built target domdec-mpi-test [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 86%] Built target pbcutil-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 86%] Built target table-test [ 87%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o" "CMakeFiles/options-test.dir/filenameoption.cpp.o" "CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o" "CMakeFiles/options-test.dir/option.cpp.o" "CMakeFiles/options-test.dir/optionsassigner.cpp.o" "CMakeFiles/options-test.dir/repeatingsection.cpp.o" "CMakeFiles/options-test.dir/timeunitmanager.cpp.o" "CMakeFiles/options-test.dir/treesupport.cpp.o" "CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/options-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 87%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlineparser.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -MF CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o.d -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -MF CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o.d -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/inmemoryserializer.cpp [ 87%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -MF CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o.d -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/keyvaluetreeserializer.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o" "CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/onlinehelp-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 88%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o -MF CMakeFiles/commandline-test.dir/filenm.cpp.o.d -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/filenm.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 89%] 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/listoflists.cpp.o -MF CMakeFiles/utility-test.dir/listoflists.cpp.o.d -o CMakeFiles/utility-test.dir/listoflists.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/listoflists.cpp [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd 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-fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -MF CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o.d -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/simulationsignal.cpp [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/utility-test.dir/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/message_string_collector.cpp /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 89%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -MF CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o.d -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/analysisdata.cpp [ 89%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o" "CMakeFiles/commandline-test.dir/filenm.cpp.o" "CMakeFiles/commandline-test.dir/pargs.cpp.o" "CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/commandline-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/updategroups.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o -MF CMakeFiles/math-test.dir/vectypes.cpp.o.d -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/vectypes.cpp /usr/bin/gmake -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend [ 90%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include 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src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/moduletest.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o -MF CMakeFiles/analysisdata-test.dir/average.cpp.o.d -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/average.cpp [ 90%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o -MF CMakeFiles/analysisdata-test.dir/histogram.cpp.o.d -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/histogram.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -MF CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/helpwriting.cpp [ 90%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/angle.cpp [ 90%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MF CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/physicalnodecommunicator.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 90%] Built target density_fitting_applied_forces-test [ 90%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -MF CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o.d -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/updategroupscog.cpp [ 90%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -MF CMakeFiles/analysisdata-test.dir/lifetime.cpp.o.d -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/lifetime.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/densityfittingmodule.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/interactiveMD.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -MF CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/outputfiles.cpp [ 90%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -MF CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/checkpoint.cpp [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o -MF CMakeFiles/utility-test.dir/range.cpp.o.d -o CMakeFiles/utility-test.dir/range.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/range.cpp [ 90%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners_gpu.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/mimic.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -MF CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectory_writing.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners_gpu.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -MF CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/exactcontinuation.cpp [ 90%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestrunners_gpu.cpp [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o -MF CMakeFiles/utility-test.dir/strconvert.cpp.o.d -o CMakeFiles/utility-test.dir/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/strconvert.cpp [ 90%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake "--color=" In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestrunners_gpu.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o -MF CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o.d -o CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multiple_time_stepping.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include 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src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestrunners_gpu.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 90%] Built target fft-test [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/mdrun-modules-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o" "CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o" "CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 90%] Built target listed_forces-test [ 90%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/distance.cpp [ 90%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o -MF CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o.d -o CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/wholemoleculetransform.cpp [ 90%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o" "CMakeFiles/analysisdata-test.dir/arraydata.cpp.o" "CMakeFiles/analysisdata-test.dir/average.cpp.o" "CMakeFiles/analysisdata-test.dir/histogram.cpp.o" "CMakeFiles/analysisdata-test.dir/lifetime.cpp.o" "CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/analysisdata-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestrunners_gpu.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 90%] Linking CXX executable ../../../../bin/mdrun-output-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o" "CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o" "CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o" "CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o" "CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/dispersion_correction.cpp [ 91%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o -MF CMakeFiles/utility-test.dir/stringutil.cpp.o.d -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/stringutil.cpp [ 91%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -MF CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o.d -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 91%] Built target energyanalysis-test [ 91%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o -MF CMakeFiles/utility-test.dir/template_mp.cpp.o.d -o CMakeFiles/utility-test.dir/template_mp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/template_mp.cpp [ 93%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/dssp.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -MF CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/initialconstraints.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Built target onlinehelp-test [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/ewaldsurfaceterm.cpp [ 94%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Built target gpu_utils-test /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o" "CMakeFiles/mdlib-test.dir/calcvir.cpp.o" "CMakeFiles/mdlib-test.dir/constr.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/ebin.cpp.o" "CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o" "CMakeFiles/mdlib-test.dir/energyoutput.cpp.o" "CMakeFiles/mdlib-test.dir/expanded.cpp.o" "CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrog.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o" "CMakeFiles/mdlib-test.dir/settle.cpp.o" "CMakeFiles/mdlib-test.dir/settletestdata.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/shake.cpp.o" "CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o" "CMakeFiles/mdlib-test.dir/updategroups.cpp.o" "CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o" "CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdlib-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o -MF CMakeFiles/utility-test.dir/textreader.cpp.o.d -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/textreader.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o cd 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/gyrate.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/hbond.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/orires.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/freezegroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -MF CMakeFiles/mdrun-test.dir/freezegroups.cpp.o.d -o CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/freezegroups.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Built target pdb2gmx1-test [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/termination.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/termination.cpp.o -MF CMakeFiles/mdrun-io-test.dir/termination.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/termination.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o -MF CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o.d -o CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/boxdeformation.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Built target topology-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o -MF CMakeFiles/utility-test.dir/textwriter.cpp.o.d -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/textwriter.cpp [ 94%] Built target awh-test [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-single-rank-algorithms-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-single-rank-algorithms-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-single-rank-algorithms-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/msd.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Built target mdrunutility-mpi-test [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o -MF CMakeFiles/utility-test.dir/typetraits.cpp.o.d -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/typetraits.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Built target mdtypes-test [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o" "CMakeFiles/math-test.dir/boxmatrix.cpp.o" "CMakeFiles/math-test.dir/coordinatetransformation.cpp.o" "CMakeFiles/math-test.dir/densityfit.cpp.o" "CMakeFiles/math-test.dir/dofit.cpp.o" "CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o" "CMakeFiles/math-test.dir/functions.cpp.o" "CMakeFiles/math-test.dir/gausstransform.cpp.o" "CMakeFiles/math-test.dir/densityfittingforce.cpp.o" "CMakeFiles/math-test.dir/invertmatrix.cpp.o" "CMakeFiles/math-test.dir/matrix.cpp.o" "CMakeFiles/math-test.dir/multidimarray.cpp.o" "CMakeFiles/math-test.dir/neldermead.cpp.o" "CMakeFiles/math-test.dir/optimization.cpp.o" "CMakeFiles/math-test.dir/paddedvector.cpp.o" "CMakeFiles/math-test.dir/vectypes.cpp.o" "CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/math-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/rdf.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/nonbonded_bench.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Built target mdrunutility-test [ 94%] Linking CXX executable ../../../../bin/mdrun-io-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o" "CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o" "CMakeFiles/mdrun-io-test.dir/grompp.cpp.o" "CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o" "CMakeFiles/mdrun-io-test.dir/termination.cpp.o" "CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/normalmodes.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Built target pdb2gmx3-test [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/sasa.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/rerun.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -MF CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o.d -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/tpitest.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/domain_decomposition.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisimtest.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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cmake_link_script CMakeFiles/minimize-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/minimize-test.dir/minimize.cpp.o" "CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/minimize-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 95%] Linking CXX executable ../../../../bin/utility-test cd 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-Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/utility-test.dir/alignedallocator.cpp.o" "CMakeFiles/utility-test.dir/arrayref.cpp.o" "CMakeFiles/utility-test.dir/booltype.cpp.o" "CMakeFiles/utility-test.dir/bitmask32.cpp.o" "CMakeFiles/utility-test.dir/bitmask64.cpp.o" "CMakeFiles/utility-test.dir/bitmask128.cpp.o" "CMakeFiles/utility-test.dir/cstringutil.cpp.o" "CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o" "CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o" "CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o" "CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o" "CMakeFiles/utility-test.dir/listoflists.cpp.o" "CMakeFiles/utility-test.dir/logger.cpp.o" "CMakeFiles/utility-test.dir/message_string_collector.cpp.o" "CMakeFiles/utility-test.dir/path.cpp.o" "CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o" "CMakeFiles/utility-test.dir/range.cpp.o" "CMakeFiles/utility-test.dir/strconvert.cpp.o" "CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o" "CMakeFiles/utility-test.dir/stringutil.cpp.o" "CMakeFiles/utility-test.dir/template_mp.cpp.o" "CMakeFiles/utility-test.dir/textreader.cpp.o" "CMakeFiles/utility-test.dir/textwriter.cpp.o" "CMakeFiles/utility-test.dir/typetraits.cpp.o" "CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisimtest.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/replicaexchange_equivalence.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 95%] Built target pdb2gmx2-test [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simple_mdrun.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/select.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/scattering.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 95%] Built target gmxana-test [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pmetest.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o [ 95%] Building CXX object 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_basic.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 95%] Built target nonbonded-fep-test [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pmetest.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 96%] Built target fileio-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/DependInfo.cmake "--color=" [ 96%] Built target simd-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-tpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o" "CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_coupling.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-multisim-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/trajectory.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/freeenergy.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/pull.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pull.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/unionfind.cpp [ 97%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrun-mpi-pme-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-pme-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o" "CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-pme-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pull_rotation.cpp [ 97%] Linking CXX executable ../../../../bin/mdrun-coordination-basic-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-basic-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-basic-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulator.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 97%] Built target coordinateio-test [ 97%] Linking CXX executable ../../../../bin/mdrun-coordination-coupling-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-coupling-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-coupling-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest 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src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/mdrun-coordination-constraints-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-constraints-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes 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/usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target options-test [100%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-equivalence-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-equivalence-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [100%] Linking CXX executable ../../../../bin/mdrun-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o" "CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-fep-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target commandline-test [100%] Linking CXX executable ../../../../bin/mdrun-rotation-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-rotation-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o" "CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-rotation-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target selection-test [100%] Linking CXX executable ../../../../bin/mdrun-simulator-comparison-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-simulator-comparison-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o" "CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-simulator-comparison-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target analysisdata-test [100%] Linking CXX executable ../../../../bin/mdrun-pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-pull-test.dir/pull.cpp.o" "CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-pull-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [100%] Linking CXX executable ../../../../bin/mdrun-vsites-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-vsites-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o" "CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-vsites-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target ewald-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target math-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdlib-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target utility-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target colvars_applied_forces-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target nbnxm-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target qmmm_applied_forces-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target tool-test /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target gmxpreprocess-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target trajectoryanalysis-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-modules-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-output-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-multisim-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-tpi-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-io-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-single-rank-algorithms-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-mpi-pme-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target minimize-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-mpi-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-coordination-constraints-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-vsites-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-coordination-basic-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-rotation-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-multisim-replex-equivalence-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-coordination-coupling-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-simulator-comparison-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-non-integrator-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-multisim-replex-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-fep-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target mdrun-pull-test /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/CMakeFiles/tests.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target tests /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build Connected to MAKE jobserver Start 1: TestUtilsUnitTests 1/77 Test #1: TestUtilsUnitTests ........................ Passed 0.52 sec Start 2: TestUtilsMpiUnitTests 2/77 Test #2: TestUtilsMpiUnitTests ..................... Passed 0.54 sec Start 3: UtilityUnitTests 3/77 Test #3: UtilityUnitTests .......................... Passed 0.52 sec Start 4: UtilityMpiUnitTests 4/77 Test #4: UtilityMpiUnitTests ....................... Passed 0.57 sec Start 5: GmxlibTests 5/77 Test #5: GmxlibTests ............................... Passed 0.52 sec Start 6: MdlibUnitTest 6/77 Test #6: MdlibUnitTest ............................. Passed 0.65 sec Start 7: AwhTest 7/77 Test #7: AwhTest ................................... Passed 0.55 sec Start 8: DensityFittingAppliedForcesUnitTest 8/77 Test #8: DensityFittingAppliedForcesUnitTest ....... Passed 0.51 sec Start 9: QMMMAppliedForcesUnitTest 9/77 Test #9: QMMMAppliedForcesUnitTest ................. Passed 0.54 sec Start 10: ColvarsAppliedForcesUnitTest 10/77 Test #10: ColvarsAppliedForcesUnitTest .............. Passed 0.55 sec Start 11: AppliedForcesUnitTest 11/77 Test #11: AppliedForcesUnitTest ..................... Passed 0.51 sec Start 12: ListedForcesTest 12/77 Test #12: ListedForcesTest .......................... Passed 0.53 sec Start 13: NbnxmTests 13/77 Test #13: NbnxmTests ................................ Passed 0.66 sec Start 14: CommandLineUnitTests 14/77 Test #14: CommandLineUnitTests ...................... Passed 0.51 sec Start 15: DomDecTests 15/77 Test #15: DomDecTests ............................... Passed 0.51 sec Start 16: DomDecMpiTests 16/77 Test #16: DomDecMpiTests ............................ Passed 0.55 sec Start 17: EwaldUnitTests 17/77 Test #17: EwaldUnitTests ............................ Passed 0.69 sec Start 18: FFTUnitTests 18/77 Test #18: FFTUnitTests .............................. Passed 0.58 sec Start 19: GpuUtilsUnitTests 19/77 Test #19: GpuUtilsUnitTests ......................... Passed 0.51 sec Start 20: HardwareUnitTests 20/77 Test #20: HardwareUnitTests ......................... Passed 0.53 sec Start 21: MathUnitTests 21/77 Test #21: MathUnitTests ............................. Passed 0.56 sec Start 22: MdrunUtilityUnitTests 22/77 Test #22: MdrunUtilityUnitTests ..................... Passed 0.51 sec Start 23: MdrunUtilityMpiUnitTests 23/77 Test #23: MdrunUtilityMpiUnitTests .................. Passed 0.54 sec Start 24: MDSpanTests 24/77 Test #24: MDSpanTests ............................... Passed 0.50 sec Start 25: MdtypesUnitTest 25/77 Test #25: MdtypesUnitTest ........................... Passed 0.52 sec Start 26: OnlineHelpUnitTests 26/77 Test #26: OnlineHelpUnitTests ....................... Passed 0.52 sec Start 27: OptionsUnitTests 27/77 Test #27: OptionsUnitTests .......................... Passed 0.51 sec Start 28: PbcutilUnitTest 28/77 Test #28: PbcutilUnitTest ........................... Passed 0.51 sec Start 29: RandomUnitTests 29/77 Test #29: RandomUnitTests ........................... Passed 0.51 sec Start 30: RestraintTests 30/77 Test #30: RestraintTests ............................ Passed 0.51 sec Start 31: TableUnitTests 31/77 Test #31: TableUnitTests ............................ Passed 0.57 sec Start 32: TaskAssignmentUnitTests 32/77 Test #32: TaskAssignmentUnitTests ................... Passed 0.51 sec Start 33: GmxTimingTests 33/77 Test #33: GmxTimingTests ............................ Passed 0.51 sec Start 34: TopologyTest 34/77 Test #34: TopologyTest .............................. Passed 0.52 sec Start 35: PullTest 35/77 Test #35: PullTest .................................. Passed 0.51 sec Start 36: SimdUnitTests 36/77 Test #36: SimdUnitTests ............................. Passed 0.54 sec Start 37: CompatibilityHelpersTests 37/77 Test #37: CompatibilityHelpersTests ................. Passed 0.51 sec Start 38: GmxAnaTest 38/77 Test #38: GmxAnaTest ................................ Passed 1.31 sec Start 39: GmxPreprocessTests 39/77 Test #39: GmxPreprocessTests ........................ Passed 1.33 sec Start 40: Pdb2gmx1Test 40/77 Test #40: Pdb2gmx1Test .............................. Passed 1.31 sec Start 41: Pdb2gmx2Test 41/77 Test #41: Pdb2gmx2Test .............................. Passed 1.61 sec Start 42: Pdb2gmx3Test 42/77 Test #42: Pdb2gmx3Test .............................. Passed 5.14 sec Start 43: CorrelationsTest 43/77 Test #43: CorrelationsTest .......................... Passed 1.44 sec Start 44: AnalysisDataUnitTests 44/77 Test #44: AnalysisDataUnitTests ..................... Passed 0.52 sec Start 45: CoordinateIOTests 45/77 Test #45: CoordinateIOTests ......................... Passed 0.55 sec Start 46: TrajectoryAnalysisUnitTests 46/77 Test #46: TrajectoryAnalysisUnitTests ............... Passed 6.70 sec Start 47: EnergyAnalysisUnitTests 47/77 Test #47: EnergyAnalysisUnitTests ................... Passed 0.65 sec Start 48: ToolUnitTests 48/77 Test #48: ToolUnitTests ............................. Passed 2.45 sec Start 49: FileIOTests 49/77 Test #49: FileIOTests ............................... Passed 0.52 sec Start 50: SelectionUnitTests 50/77 Test #50: SelectionUnitTests ........................ Passed 0.63 sec Start 51: MdrunOutputTests 51/77 Test #51: MdrunOutputTests .......................... Passed 0.62 sec Start 52: MdrunModulesTests 52/77 Test #52: MdrunModulesTests ......................... Passed 0.73 sec Start 53: MdrunIOTests 53/77 Test #53: MdrunIOTests .............................. Passed 0.65 sec Start 54: MdrunTestsOneRank 54/77 Test #54: MdrunTestsOneRank ......................... Passed 2.39 sec Start 55: MdrunTestsTwoRanks 55/77 Test #55: MdrunTestsTwoRanks ........................ Passed 2.45 sec Start 56: MdrunSingleRankAlgorithmsTests 56/77 Test #56: MdrunSingleRankAlgorithmsTests ............ Passed 2.06 sec Start 57: Minimize1RankTests 57/77 Test #57: Minimize1RankTests ........................ Passed 1.49 sec Start 58: Minimize2RankTests 58/77 Test #58: Minimize2RankTests ........................ Passed 1.51 sec Start 59: MdrunNonIntegratorTests 59/77 Test #59: MdrunNonIntegratorTests ................... Passed 0.53 sec Start 60: MdrunTpiTests 60/77 Test #60: MdrunTpiTests ............................. Passed 1.11 sec Start 61: MdrunMpiTests 61/77 Test #61: MdrunMpiTests ............................. Passed 1.00 sec Start 62: MdrunMultiSimTests 62/77 Test #62: MdrunMultiSimTests ........................ Passed 0.67 sec Start 63: MdrunMultiSimReplexTests 63/77 Test #63: MdrunMultiSimReplexTests .................. Passed 0.64 sec Start 64: MdrunMultiSimReplexEquivalenceTests 64/77 Test #64: MdrunMultiSimReplexEquivalenceTests ....... Passed 3.52 sec Start 65: MdrunMpi1RankPmeTests 65/77 Test #65: MdrunMpi1RankPmeTests ..................... Passed 1.42 sec Start 66: MdrunMpi2RankPmeTests 66/77 Test #66: MdrunMpi2RankPmeTests ..................... Passed 2.01 sec Start 67: MdrunCoordinationBasicTests1Rank 67/77 Test #67: MdrunCoordinationBasicTests1Rank .......... Passed 0.55 sec Start 68: MdrunCoordinationBasicTests2Ranks 68/77 Test #68: MdrunCoordinationBasicTests2Ranks ......... Passed 0.56 sec Start 69: MdrunCoordinationCouplingTests1Rank 69/77 Test #69: MdrunCoordinationCouplingTests1Rank ....... Passed 0.55 sec Start 70: MdrunCoordinationCouplingTests2Ranks 70/77 Test #70: MdrunCoordinationCouplingTests2Ranks ...... Passed 0.55 sec Start 71: MdrunCoordinationConstraintsTests1Rank 71/77 Test #71: MdrunCoordinationConstraintsTests1Rank .... Passed 0.55 sec Start 72: MdrunCoordinationConstraintsTests2Ranks 72/77 Test #72: MdrunCoordinationConstraintsTests2Ranks ... Passed 0.55 sec Start 73: MdrunFEPTests 73/77 Test #73: MdrunFEPTests ............................. Passed 0.51 sec Start 74: MdrunPullTests 74/77 Test #74: MdrunPullTests ............................ Passed 1.70 sec Start 75: MdrunRotationTests 75/77 Test #75: MdrunRotationTests ........................ Passed 0.64 sec Start 76: MdrunSimulatorComparison 76/77 Test #76: MdrunSimulatorComparison .................. Passed 0.51 sec Start 77: MdrunVirtualSiteTests 77/77 Test #77: MdrunVirtualSiteTests ..................... Passed 0.89 sec 100% tests passed, 0 tests failed out of 77 Label Time Summary: GTest = 130.04 sec*proc (77 tests) IntegrationTest = 77.97 sec*proc (22 tests) MpiTest = 71.16 sec*proc (21 tests) QuickGpuTest = 34.81 sec*proc (18 tests) SlowGpuTest = 51.44 sec*proc (14 tests) SlowTest = 24.08 sec*proc (13 tests) UnitTest = 27.99 sec*proc (42 tests) Total Test time (real) = 74.48 sec gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target run-ctest-nophys /usr/bin/gmake -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target missing-tests-notice /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/CMakeFiles/check.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' [100%] Built target check gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build/CMakeFiles 0 gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich/redhat-linux-build' + [[ mpich = openmpi ]] + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n mpich + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd openmpi + [[ openmpi = openmpi ]] + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + /usr/bin/cmake --build redhat-linux-build -j48 --verbose --target check Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 check /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 check gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/CMakeFiles 87 /usr/bin/gmake -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs 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src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis 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Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". [ 0%] Building CXX object src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/external/googletest/googletest && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/src/gtest-all.cc Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". [ 0%] Generating release version information gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.13 -D PROJECT_VERSION=2024.3-Fedora42 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora42 -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 1%] Built target energyanalysis [ 1%] Built target mdrun_objlib Consolidate compiler generated dependencies of target options [ 1%] Built target thread_mpi gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build [ 1%] Built target scanner gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 1%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/options/CMakeFiles/options.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' Consolidate compiler generated dependencies of target clFFT gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build [ 1%] Built target release-version-info gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". [ 2%] Built target options Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". [ 3%] Built target clFFT Consolidate compiler generated dependencies of target pulling gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build Consolidate compiler generated dependencies of target colvars_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/pulling/CMakeFiles/pulling.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build [ 3%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/colvars_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" [ 5%] Built target colvars_objlib Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". 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/usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/test_device.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/test_device.cpp.o CMakeFiles/testutils.dir/test_hardware_environment.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/topologyhelpers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/trajectoryreader.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 67%] Built target testutils /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/build.make src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend /usr/bin/gmake -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build.make src/gromacs/timing/tests/CMakeFiles/timing-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend /usr/bin/gmake -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend /usr/bin/gmake -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend /usr/bin/gmake -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/timing/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/timing/tests/CMakeFiles/timing-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/tests 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src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxana/tests 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src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests 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src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -MF CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o.d -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/mpitest.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmminputgenerator.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o -MF CMakeFiles/awh-test.dir/awh_setup.cpp.o.d -o CMakeFiles/awh-test.dir/awh_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/awh_setup.cpp cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/nonbonded/tests/nb_free_energy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" 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src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarspreprocessor.cpp [ 67%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o [ 67%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfitting.cpp [ 67%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -MF CMakeFiles/nbnxm-test.dir/exclusions.cpp.o.d -o CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/exclusions.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -MF CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o.d -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o -MF CMakeFiles/listed_forces-test.dir/bonded.cpp.o.d -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/bonded.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -MF CMakeFiles/applied_forces-test.dir/electricfield.cpp.o.d -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/tests/electricfield.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 67%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o /usr/bin/gmake -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o -MF CMakeFiles/domdec-test.dir/hashedmap.cpp.o.d -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/hashedmap.cpp [ 67%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o [ 67%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o -MF CMakeFiles/fft-test.dir/fft.cpp.o.d -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests/fft.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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67%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o [ 67%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o [ 67%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o [ 67%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -MF CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o.d -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/accessor_policy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -MF CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o.d -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 67%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o [ 67%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o [ 67%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/enerdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/enerdata.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o.d -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/abstractoptionstorage.cpp [ 67%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o [ 68%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o [ 68%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o [ 70%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o [ 70%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o -MF CMakeFiles/restraintpotential-test.dir/manager.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/tests/manager.cpp [ 68%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o -MF CMakeFiles/compat-test.dir/mp11.cpp.o.d -o CMakeFiles/compat-test.dir/mp11.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/tests/mp11.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o -MF CMakeFiles/table-test.dir/splinetable.cpp.o.d -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/tests/splinetable.cpp [ 70%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o -MF CMakeFiles/pbcutil-test.dir/com.cpp.o.d -o CMakeFiles/pbcutil-test.dir/com.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/com.cpp [ 70%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 70%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o -MF CMakeFiles/pull-test.dir/pull.cpp.o.d -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/tests/pull.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -MF CMakeFiles/random-test.dir/exponentialdistribution.cpp.o.d -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/exponentialdistribution.cpp [ 70%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o [ 70%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o -MF CMakeFiles/gmxana-test.dir/entropy.cpp.o.d -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/entropy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/datatest.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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[ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 70%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o [ 70%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/tests/energyterm.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o -MF CMakeFiles/correlations-test.dir/autocorr.cpp.o.d -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/autocorr.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/editconf.cpp [ 70%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o -MF CMakeFiles/coordinateio-test.dir/builder.cpp.o.d -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/builder.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/exclusions.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/haloexchange_mpi.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests/fft.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 70%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -MF CMakeFiles/correlations-test.dir/correlationdataset.cpp.o.d -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 70%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernel_test.cpp [ 70%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmebsplinetest.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o" "CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-mpi-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_availability.cpp [ 70%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o -MF CMakeFiles/mdspan-test.dir/extents.cpp.o.d -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/extents.cpp [ 70%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_chi.cpp [ 70%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -MF CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 70%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernelsetup.cpp [ 70%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/timing/tests/CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -MF CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o.d -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/bootstrap_loadstore.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernel_test.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -MF CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o.d -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -MF CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o.d -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 70%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o -MF CMakeFiles/correlations-test.dir/expfit.cpp.o.d -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/expfit.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernelsetup.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 70%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmtopologypreprocessor.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o -MF CMakeFiles/random-test.dir/gammadistribution.cpp.o.d -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/gammadistribution.cpp /usr/bin/gmake -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd 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70%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calcvir.cpp.o [ 70%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/calcvir.cpp [ 70%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 70%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/restraintpotential-test.dir/manager.cpp.o" "CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/restraintpotential-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingamplitudelookup.cpp [ 70%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../../bin/timing-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/timing-test.dir/link.txt --verbose=1 [ 70%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/timing-test.dir/timing.cpp.o" "CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/timing-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_stream_manager.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/moduletest.cpp [ 70%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvars.cpp [ 70%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o" "CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-mpi-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_openmpi.a ../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../lib/libtestutils.a ../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../lib/libgmock.a ../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o -MF CMakeFiles/mdlib-test.dir/constr.cpp.o.d -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constr.cpp [ 70%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/helpwriting.cpp.o -MF CMakeFiles/tool-test.dir/helpwriting.cpp.o.d -o CMakeFiles/tool-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/helpwriting.cpp [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 70%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o -MF CMakeFiles/utility-test.dir/arrayref.cpp.o.d -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/arrayref.cpp [ 70%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_mindist.cpp [ 70%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/applied_forces-test.dir/electricfield.cpp.o" "CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/applied_forces-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/pull-test.dir/pull.cpp.o" "CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/pulling.dir/output.cpp.o ../CMakeFiles/pulling.dir/pull.cpp.o ../CMakeFiles/pulling.dir/pull_rotation.cpp.o ../CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o ../CMakeFiles/pulling.dir/pullutil.cpp.o ../CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -lmuparser -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o -MF CMakeFiles/awh-test.dir/bias.cpp.o.d -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/bias.cpp [ 70%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a "CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o" "CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 70%] Built target onlinehelp-test-shared [ 70%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -MF CMakeFiles/ewald-test.dir/pmegathertest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmegathertest.cpp [ 70%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o -MF CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o.d -o CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/mockhardwaretopology.cpp [ 70%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 70%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -MF CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o.d -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 70%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o" "CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o" "CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/energyanalysis-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 [ 70%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/compat-test.dir/mp11.cpp.o" "CMakeFiles/compat-test.dir/pointers.cpp.o" "CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/compat-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 [ 70%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o -MF CMakeFiles/random-test.dir/normaldistribution.cpp.o.d -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/normaldistribution.cpp /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a "CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o" "CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 70%] Built target mdrunutility-test-shared [ 70%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o -MF CMakeFiles/pbcutil-test.dir/mshift.cpp.o.d -o CMakeFiles/pbcutil-test.dir/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/mshift.cpp [ 70%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmoptions.cpp [ 70%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingforceprovider.cpp [ 70%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o -MF CMakeFiles/tool-test.dir/make_ndx.cpp.o.d -o CMakeFiles/tool-test.dir/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/make_ndx.cpp [ 70%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o" "CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o ../CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o ../CMakeFiles/taskassignment.dir/findallgputasks.cpp.o ../CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o ../CMakeFiles/taskassignment.dir/resourcedivision.cpp.o ../CMakeFiles/taskassignment.dir/taskassignment.cpp.o ../CMakeFiles/taskassignment.dir/usergpuids.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -DGMX_CP2K=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmforceprovider.cpp [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genion.cpp [ 70%] Linking CXX executable ../../../../bin/domdec-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o" "CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-mpi-test -Wl,-rpath,/usr/lib64/openmpi/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -MF CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o.d -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/outputadapters.cpp [ 70%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -MF CMakeFiles/math-test.dir/coordinatetransformation.cpp.o.d -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/coordinatetransformation.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmegathertest.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/domdec-test.dir/hashedmap.cpp.o" "CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o" "CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulatorcomparison.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesolvetest.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 70%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_traj.cpp [ 70%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -MF CMakeFiles/topology-test.dir/exclusionblocks.cpp.o.d -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/exclusionblocks.cpp [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarsoptions.cpp [ 70%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fft/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o -MF CMakeFiles/mdspan-test.dir/layouts.cpp.o.d -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/layouts.cpp [ 70%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o -MF CMakeFiles/simd-test.dir/scalar_util.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar_util.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -MF CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o.d -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/testasserts_tests.cpp [ 70%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o -MF CMakeFiles/listed_forces-test.dir/pairs.cpp.o.d -o CMakeFiles/listed_forces-test.dir/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/pairs.cpp [ 70%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx1-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o -MF CMakeFiles/tool-test.dir/report_methods.cpp.o.d -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/report_methods.cpp [ 70%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o -MF CMakeFiles/random-test.dir/seed.cpp.o.d -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/seed.cpp [ 70%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -MF CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o.d -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 70%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx2-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genrestr.cpp [ 70%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingoptions.cpp [ 70%] Linking CXX executable ../../../../../bin/nonbonded-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nonbonded-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o" "CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/nonbonded-fep-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi.a ../../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgmock.a ../../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/fft-test.dir/fft.cpp.o" "CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fft-test -Wl,-rpath,/usr/lib64/openmpi/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 [ 70%] Linking CXX executable ../../../../bin/pdb2gmx3-test /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/correlations-test.dir/autocorr.cpp.o" "CMakeFiles/correlations-test.dir/correlationdataset.cpp.o" "CMakeFiles/correlations-test.dir/expfit.cpp.o" "CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o" "CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/correlations-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx3-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbc.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/pbc.cpp [ 70%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o -MF CMakeFiles/mdspan-test.dir/mdspan.cpp.o.d -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/mdspan.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/terminationhelper.cpp [ 70%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -MF CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o.d -o CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/position_restraints.cpp [ 70%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/table-test.dir/splinetable.cpp.o" "CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/table-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 71%] Linking CXX executable ../../../../bin/nbnxm-test cd 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-Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/nbnxm-test.dir/exclusions.cpp.o" "CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o" "CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o" "CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/nbnxm-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 71%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o -MF CMakeFiles/options-test.dir/filenameoption.cpp.o.d -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/filenameoption.cpp [ 72%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gen_maxwell_velocities.cpp [ 72%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o -MF CMakeFiles/simd-test.dir/scalar_math.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar_math.cpp [ 73%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o -MF CMakeFiles/topology-test.dir/idef.cpp.o.d -o CMakeFiles/topology-test.dir/idef.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/idef.cpp [ 73%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmm.cpp [ 73%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o -MF CMakeFiles/math-test.dir/densityfit.cpp.o.d -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/densityfit.cpp [ 73%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/checkpointdata.cpp [ 73%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o -MF CMakeFiles/tool-test.dir/trjconv.cpp.o.d -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/trjconv.cpp [ 73%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -MF CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o.d -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/xvgtest_tests.cpp [ 73%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectorycomparison.cpp [ 73%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/gmxana-test.dir/entropy.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o" "CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxana-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 73%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o -MF CMakeFiles/random-test.dir/threefry.cpp.o.d -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/threefry.cpp [ 73%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/pbcenums.cpp [ 73%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestdata.cpp [ 73%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 74%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o -MF CMakeFiles/awh-test.dir/biasgrid.cpp.o.d -o CMakeFiles/awh-test.dir/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biasgrid.cpp [ 74%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o cd 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -MF CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o.d -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o -MF CMakeFiles/topology-test.dir/index.cpp.o.d -o CMakeFiles/topology-test.dir/index.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/index.cpp [ 75%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 75%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o -MF CMakeFiles/simd-test.dir/simd.cpp.o.d -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd.cpp [ 75%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o -MF CMakeFiles/mdlib-test.dir/ebin.cpp.o.d -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/ebin.cpp [ 75%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/filenameoptionmanager.cpp [ 75%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o -MF CMakeFiles/awh-test.dir/biasstate.cpp.o.d -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biasstate.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/device_management.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 75%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -MF CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o.d -o CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/bias_fep_lambda_state.cpp [ 75%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/pbcutil-test.dir/com.cpp.o" "CMakeFiles/pbcutil-test.dir/mshift.cpp.o" "CMakeFiles/pbcutil-test.dir/pbc.cpp.o" "CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o" "CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pbcutil-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 75%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/testutils-test.dir/interactivetest.cpp.o" "CMakeFiles/testutils-test.dir/refdata_tests.cpp.o" "CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o" "CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o" "CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_openmpi.a ../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../lib/libtestutils.a ../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../lib/libgmock.a ../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 75%] Linking CXX executable ../../../../../bin/density_fitting_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/density_fitting_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/density_fitting_applied_forces-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi.a ../../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 75%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o" "CMakeFiles/mdspan-test.dir/extents.cpp.o" "CMakeFiles/mdspan-test.dir/extensions.cpp.o" "CMakeFiles/mdspan-test.dir/layouts.cpp.o" "CMakeFiles/mdspan-test.dir/mdspan.cpp.o" "CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdspan-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 75%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 75%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a "CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a [ 75%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/tool-test.dir/convert-tpr.cpp.o.d -o CMakeFiles/tool-test.dir/convert-tpr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/convert-tpr.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 75%] Built target analysisdata-test-shared [ 77%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o -MF CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o.d -o CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/forcebuffers.cpp [ 78%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/listed_forces-test.dir/bonded.cpp.o" "CMakeFiles/listed_forces-test.dir/pairs.cpp.o" "CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o" "CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/listed_forces-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 78%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/hardware-test.dir/cpuinfo.cpp.o" "CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/device_management.cpp.o" "CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/hardware-test -Wl,-rpath,/usr/lib64/openmpi/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 78%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/qmmm_applied_forces-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi.a ../../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 78%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pme.cpp [ 79%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp:42: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o -MF CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o.d -o CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/energydrifttracker.cpp [ 79%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 79%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o -MF CMakeFiles/math-test.dir/dofit.cpp.o.d -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/dofit.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -MF CMakeFiles/random-test.dir/uniformintdistribution.cpp.o.d -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/uniformintdistribution.cpp [ 80%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_buffer.cpp [ 80%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o -MF CMakeFiles/coordinateio-test.dir/register.cpp.o.d -o CMakeFiles/coordinateio-test.dir/register.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/register.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pme.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Linking CXX executable ../../../../../bin/colvars_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/colvars_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/colvars_applied_forces-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi.a ../../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 80%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 80%] Linking CXX static library ../../../../lib/libmdrun_test_infrastructure.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o /usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a [ 81%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -MF CMakeFiles/mdlib-test.dir/energyoutput.cpp.o.d -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/energyoutput.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 81%] Built target mdrun_test_infrastructure [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/expanded.cpp.o -MF CMakeFiles/mdlib-test.dir/expanded.cpp.o.d -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/expanded.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_buffer.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 81%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o -MF CMakeFiles/awh-test.dir/friction_metric.cpp.o.d -o CMakeFiles/awh-test.dir/friction_metric.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/friction_metric.cpp [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o -MF CMakeFiles/math-test.dir/functions.cpp.o.d -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/functions.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -MF CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o.d -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/exponentialmovingaverage.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 81%] Built target testutils-mpi-test [ 81%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/tool-test.dir/dump.cpp.o" "CMakeFiles/tool-test.dir/helpwriting.cpp.o" "CMakeFiles/tool-test.dir/make_ndx.cpp.o" "CMakeFiles/tool-test.dir/report_methods.cpp.o" "CMakeFiles/tool-test.dir/trjconv.cpp.o" "CMakeFiles/tool-test.dir/convert-tpr.cpp.o" "CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/tool-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd 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-DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o -MF CMakeFiles/coordinateio-test.dir/requirements.cpp.o.d -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/requirements.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp [ 81%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/massrepartitioning.cpp [ 81%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && 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/usr/bin/gmake -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 81%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o" "CMakeFiles/ewald-test.dir/pmegathertest.cpp.o" "CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o" "CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o" "CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o" "CMakeFiles/ewald-test.dir/pme.cpp.o" "CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/ewald-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 81%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include 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src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o -MF CMakeFiles/simd-test.dir/simd_integer.cpp.o.d -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_integer.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 81%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 81%] Built target restraintpotential-test [ 81%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/random-test.dir/exponentialdistribution.cpp.o" "CMakeFiles/random-test.dir/gammadistribution.cpp.o" "CMakeFiles/random-test.dir/normaldistribution.cpp.o" "CMakeFiles/random-test.dir/seed.cpp.o" "CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o" "CMakeFiles/random-test.dir/threefry.cpp.o" "CMakeFiles/random-test.dir/uniformintdistribution.cpp.o" "CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o" "CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/random-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o -MF CMakeFiles/math-test.dir/gausstransform.cpp.o.d -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/gausstransform.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 81%] Built target utility-mpi-test [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o -MF CMakeFiles/fileio-test.dir/confio.cpp.o.d -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/confio.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake "--color=" [ 82%] Built target timing-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 82%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o -MF CMakeFiles/selection-test.dir/indexutil.cpp.o.d -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/indexutil.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -MF CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/compressed_x_output.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/interactiveMD.cpp [ 82%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -MF CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setbothtime.cpp [ 82%] Linking CXX executable ../../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/awh-test.dir/awh_setup.cpp.o" "CMakeFiles/awh-test.dir/bias.cpp.o" "CMakeFiles/awh-test.dir/biasgrid.cpp.o" "CMakeFiles/awh-test.dir/biassharing.cpp.o" "CMakeFiles/awh-test.dir/biasstate.cpp.o" "CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o" "CMakeFiles/awh-test.dir/friction_metric.cpp.o" "CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/awh-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi.a ../../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/gpueventsynchronizer.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_event_ocl.h:44, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/device_event.h:117, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gpueventsynchronizer.h:51, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/gpueventsynchronizer.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 82%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o -MF CMakeFiles/fileio-test.dir/filemd5.cpp.o.d -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/filemd5.cpp [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/mimic.cpp [ 82%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/typecasts.cpp [ 82%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 82%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o -MF CMakeFiles/utility-test.dir/bitmask128.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask128.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/outputfiles.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o -MF CMakeFiles/math-test.dir/invertmatrix.cpp.o.d -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/invertmatrix.cpp [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o -MF CMakeFiles/selection-test.dir/nbsearch.cpp.o.d -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/nbsearch.cpp [ 82%] Linking CXX executable ../../../../bin/mdtypes-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdtypes-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdtypes-test.dir/enerdata.cpp.o" "CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o" "CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o" "CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o" "CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o" "CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdtypes-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 82%] Built target domdec-test [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o cd 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82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -MF CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/exactcontinuation.cpp [ 82%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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"CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o" "CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o" "CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o" "CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o" "CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o" "CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gpu_utils-test -Wl,-rpath,/usr/lib64/openmpi/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o -MF CMakeFiles/math-test.dir/matrix.cpp.o.d -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/matrix.cpp [ 82%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o" "CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o" "CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 83%] Built target pull-test [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o -MF CMakeFiles/simd-test.dir/simd_memory.cpp.o.d -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_memory.cpp [ 83%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o -MF CMakeFiles/selection-test.dir/poscalc.cpp.o.d -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/poscalc.cpp [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -MF CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectory_writing.cpp [ 83%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o -MF CMakeFiles/math-test.dir/multidimarray.cpp.o.d -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/multidimarray.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build 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-fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -MF CMakeFiles/mdrun-test.dir/swapcoords.cpp.o.d -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/swapcoords.cpp [ 83%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 83%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/coordinateio-test.dir/builder.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o" "CMakeFiles/coordinateio-test.dir/register.cpp.o" "CMakeFiles/coordinateio-test.dir/requirements.cpp.o" "CMakeFiles/coordinateio-test.dir/setatoms.cpp.o" "CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o" "CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o" "CMakeFiles/coordinateio-test.dir/settimestep.cpp.o" "CMakeFiles/coordinateio-test.dir/testmodule.cpp.o" "CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/coordinateio-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 83%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -MF CMakeFiles/fileio-test.dir/mrcserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/mrcserializer.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 83%] Built target taskassignment-test [ 83%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -MF CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o.d -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/enumerationhelpers.cpp [ 83%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o -MF CMakeFiles/selection-test.dir/selectioncollection.cpp.o.d -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/selectioncollection.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -MF CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o.d -o CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/parrinellorahman.cpp [ 85%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -MF CMakeFiles/mdrun-io-test.dir/grompp.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/grompp.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 85%] Built target domdec-mpi-test [ 85%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o -MF CMakeFiles/math-test.dir/neldermead.cpp.o.d -o CMakeFiles/math-test.dir/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/neldermead.cpp [ 85%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -MF CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o.d -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/fixedcapacityvector.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 85%] Built target table-test [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_vector_operations.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 85%] Built target pbcutil-test [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o -MF CMakeFiles/mdlib-test.dir/settle.cpp.o.d -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settle.cpp [ 85%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o" "CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o" "CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o" "CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o" "CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 87%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -MF CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 87%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o -MF CMakeFiles/fileio-test.dir/readinp.cpp.o.d -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/readinp.cpp [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" 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CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 87%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/settletestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestdata.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o -MF CMakeFiles/fileio-test.dir/tngio.cpp.o.d -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/tngio.cpp [ 88%] Linking CXX executable ../../../../bin/mdrun-io-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o" "CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o" "CMakeFiles/mdrun-io-test.dir/grompp.cpp.o" "CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o" "CMakeFiles/mdrun-io-test.dir/termination.cpp.o" "CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/minimize.cpp.o -MF CMakeFiles/minimize-test.dir/minimize.cpp.o.d -o CMakeFiles/minimize-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/minimize.cpp [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o -MF CMakeFiles/mdlib-test.dir/shake.cpp.o.d -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/shake.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o -MF CMakeFiles/fileio-test.dir/xvgio.cpp.o.d -o CMakeFiles/fileio-test.dir/xvgio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/xvgio.cpp [ 90%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o" "CMakeFiles/options-test.dir/filenameoption.cpp.o" "CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o" "CMakeFiles/options-test.dir/option.cpp.o" "CMakeFiles/options-test.dir/optionsassigner.cpp.o" "CMakeFiles/options-test.dir/repeatingsection.cpp.o" "CMakeFiles/options-test.dir/timeunitmanager.cpp.o" "CMakeFiles/options-test.dir/treesupport.cpp.o" "CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/options-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a 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"CMakeFiles/simd-test.dir/simd_memory.cpp.o" "CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/simd4.cpp.o" "CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd4_math.cpp.o" "CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/simd-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/listoflists.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CMakeFiles/utility-test.dir/listoflists.cpp.o.d -o CMakeFiles/utility-test.dir/listoflists.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/listoflists.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include 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CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/fileio-test.dir/checkpoint.cpp.o" "CMakeFiles/fileio-test.dir/confio.cpp.o" "CMakeFiles/fileio-test.dir/filemd5.cpp.o" "CMakeFiles/fileio-test.dir/filetypes.cpp.o" "CMakeFiles/fileio-test.dir/mrcserializer.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o" "CMakeFiles/fileio-test.dir/readinp.cpp.o" "CMakeFiles/fileio-test.dir/timecontrol.cpp.o" "CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o" "CMakeFiles/fileio-test.dir/tngio.cpp.o" "CMakeFiles/fileio-test.dir/xvgio.cpp.o" "CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fileio-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 90%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o" "CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners_gpu.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners_gpu.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 90%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestrunners_gpu.cpp [ 90%] Built target density_fitting_applied_forces-test [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisimtest.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 90%] Built target energyanalysis-test [ 91%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestrunners_gpu.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -MF CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o.d -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 91%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o -MF CMakeFiles/utility-test.dir/range.cpp.o.d -o CMakeFiles/utility-test.dir/range.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/range.cpp [ 91%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o -MF CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o.d -o CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/mdgpugraph.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisimtest.cpp [ 93%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestrunners_gpu.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 93%] Built target fft-test [ 93%] Linking CXX executable ../../../../bin/mdrun-multisim-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestrunners_gpu.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/replicaexchange_equivalence.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pmetest.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 93%] Built target gpu_utils-test [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o -MF CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o.d -o CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/wholemoleculetransform.cpp [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -MF CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o.d -o CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/stringtoenumvalueconverter.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/pme.h:51, from 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Defaulting to 300 (OpenCL 3.0)") | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 93%] Built target awh-test [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o" "CMakeFiles/mdlib-test.dir/calcvir.cpp.o" "CMakeFiles/mdlib-test.dir/constr.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/ebin.cpp.o" "CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o" "CMakeFiles/mdlib-test.dir/energyoutput.cpp.o" "CMakeFiles/mdlib-test.dir/expanded.cpp.o" "CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrog.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o" "CMakeFiles/mdlib-test.dir/settle.cpp.o" "CMakeFiles/mdlib-test.dir/settletestdata.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/shake.cpp.o" "CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o" "CMakeFiles/mdlib-test.dir/updategroups.cpp.o" "CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o" "CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdlib-test -Wl,-rpath,/usr/lib64/openmpi/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 93%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o -MF CMakeFiles/utility-test.dir/template_mp.cpp.o.d -o CMakeFiles/utility-test.dir/template_mp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/template_mp.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_basic.cpp [ 93%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o" "CMakeFiles/math-test.dir/boxmatrix.cpp.o" "CMakeFiles/math-test.dir/coordinatetransformation.cpp.o" "CMakeFiles/math-test.dir/densityfit.cpp.o" "CMakeFiles/math-test.dir/dofit.cpp.o" "CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o" "CMakeFiles/math-test.dir/functions.cpp.o" "CMakeFiles/math-test.dir/gausstransform.cpp.o" "CMakeFiles/math-test.dir/densityfittingforce.cpp.o" "CMakeFiles/math-test.dir/invertmatrix.cpp.o" "CMakeFiles/math-test.dir/matrix.cpp.o" "CMakeFiles/math-test.dir/multidimarray.cpp.o" "CMakeFiles/math-test.dir/neldermead.cpp.o" "CMakeFiles/math-test.dir/optimization.cpp.o" "CMakeFiles/math-test.dir/paddedvector.cpp.o" "CMakeFiles/math-test.dir/vectypes.cpp.o" "CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/math-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 93%] Built target mdtypes-test [ 93%] Linking CXX executable ../../../../bin/mdrun-mpi-pme-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-pme-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o" "CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-pme-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o -MF CMakeFiles/utility-test.dir/textwriter.cpp.o.d -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/textwriter.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_constraints.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o -MF CMakeFiles/utility-test.dir/typetraits.cpp.o.d -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/typetraits.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 94%] Built target pdb2gmx3-test [ 94%] Linking CXX executable ../../../../bin/mdrun-coordination-basic-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-basic-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-basic-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_coupling.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/utility-test.dir/alignedallocator.cpp.o" "CMakeFiles/utility-test.dir/arrayref.cpp.o" "CMakeFiles/utility-test.dir/booltype.cpp.o" "CMakeFiles/utility-test.dir/bitmask32.cpp.o" "CMakeFiles/utility-test.dir/bitmask64.cpp.o" "CMakeFiles/utility-test.dir/bitmask128.cpp.o" "CMakeFiles/utility-test.dir/cstringutil.cpp.o" "CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o" "CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o" "CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o" "CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o" "CMakeFiles/utility-test.dir/listoflists.cpp.o" "CMakeFiles/utility-test.dir/logger.cpp.o" "CMakeFiles/utility-test.dir/message_string_collector.cpp.o" "CMakeFiles/utility-test.dir/path.cpp.o" "CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o" "CMakeFiles/utility-test.dir/range.cpp.o" "CMakeFiles/utility-test.dir/strconvert.cpp.o" "CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o" "CMakeFiles/utility-test.dir/stringutil.cpp.o" "CMakeFiles/utility-test.dir/template_mp.cpp.o" "CMakeFiles/utility-test.dir/textreader.cpp.o" "CMakeFiles/utility-test.dir/textwriter.cpp.o" "CMakeFiles/utility-test.dir/typetraits.cpp.o" "CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 94%] Linking CXX executable ../../../../bin/mdrun-coordination-constraints-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-constraints-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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/usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 94%] Built target pdb2gmx1-test [ 94%] Linking CXX executable ../../../../bin/mdrun-coordination-coupling-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-coupling-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables 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../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pull_rotation.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 94%] Built target simd-test [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o" "CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-fep-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 94%] Linking CXX executable ../../../../bin/mdrun-rotation-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-rotation-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o" "CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-rotation-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulator.cpp /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-pull-test.dir/pull.cpp.o" "CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-pull-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 95%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 95%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 95%] Built target coordinateio-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 95%] Built target options-test [ 95%] Linking CXX executable ../../../../bin/mdrun-simulator-comparison-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script 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"CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-simulator-comparison-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 95%] Built target fileio-test [ 95%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 95%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/mdmodulesnotifier.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-vsites-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-vsites-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o" "CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-vsites-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 95%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -MF CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 96%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlineparser.cpp /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake "--color=" [ 96%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o" "CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o" "CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 96%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpformat.cpp [ 96%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o" "CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 96%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpmanager.cpp /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 96%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -MF CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o.d -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/analysisdata.cpp [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp /usr/bin/gmake -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/moduletest.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o -MF CMakeFiles/commandline-test.dir/filenm.cpp.o.d -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/filenm.cpp [ 97%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/arraydata.cpp [ 97%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 97%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o" "CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/onlinehelp-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 97%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o -MF CMakeFiles/analysisdata-test.dir/average.cpp.o.d -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/average.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 97%] Built target math-test [ 97%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o" "CMakeFiles/commandline-test.dir/filenm.cpp.o" "CMakeFiles/commandline-test.dir/pargs.cpp.o" "CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/commandline-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 97%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o -MF CMakeFiles/analysisdata-test.dir/histogram.cpp.o.d -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/histogram.cpp [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp [ 97%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/analysisdata-test.dir/lifetime.cpp.o.d -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/lifetime.cpp [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/distance.cpp [ 97%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 97%] Built target mdlib-test [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/dssp.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 98%] Built target selection-test [ 98%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o" "CMakeFiles/analysisdata-test.dir/arraydata.cpp.o" "CMakeFiles/analysisdata-test.dir/average.cpp.o" "CMakeFiles/analysisdata-test.dir/histogram.cpp.o" "CMakeFiles/analysisdata-test.dir/lifetime.cpp.o" "CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/analysisdata-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 98%] Built target utility-test [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem 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-fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/sasa.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 98%] Built target colvars_applied_forces-test [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [ 98%] Built target commandline-test [100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi.a 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physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build Connected to MAKE jobserver Start 1: TestUtilsUnitTests 1/77 Test #1: TestUtilsUnitTests ........................ Passed 1.60 sec Start 2: TestUtilsMpiUnitTests 2/77 Test #2: TestUtilsMpiUnitTests ..................... Passed 1.64 sec Start 3: UtilityUnitTests 3/77 Test #3: UtilityUnitTests .......................... Passed 1.60 sec Start 4: UtilityMpiUnitTests 4/77 Test #4: UtilityMpiUnitTests ....................... Passed 1.61 sec Start 5: GmxlibTests 5/77 Test #5: GmxlibTests ............................... Passed 1.60 sec Start 6: MdlibUnitTest 6/77 Test #6: MdlibUnitTest ............................. Passed 1.74 sec Start 7: AwhTest 7/77 Test #7: AwhTest ................................... Passed 1.63 sec Start 8: DensityFittingAppliedForcesUnitTest 8/77 Test #8: DensityFittingAppliedForcesUnitTest ....... Passed 1.59 sec Start 9: QMMMAppliedForcesUnitTest 9/77 Test #9: QMMMAppliedForcesUnitTest ................. Passed 1.66 sec Start 10: ColvarsAppliedForcesUnitTest 10/77 Test #10: ColvarsAppliedForcesUnitTest .............. Passed 1.65 sec Start 11: AppliedForcesUnitTest 11/77 Test #11: AppliedForcesUnitTest ..................... Passed 1.59 sec Start 12: ListedForcesTest 12/77 Test #12: ListedForcesTest .......................... Passed 1.61 sec Start 13: NbnxmTests 13/77 Test #13: NbnxmTests ................................ Passed 1.76 sec Start 14: CommandLineUnitTests 14/77 Test #14: CommandLineUnitTests ...................... Passed 1.59 sec Start 15: DomDecTests 15/77 Test #15: DomDecTests ............................... Passed 1.59 sec Start 16: DomDecMpiTests 16/77 Test #16: DomDecMpiTests ............................ Passed 1.64 sec Start 17: EwaldUnitTests 17/77 Test #17: EwaldUnitTests ............................ Passed 1.90 sec Start 18: FFTUnitTests 18/77 Test #18: FFTUnitTests .............................. Passed 1.69 sec Start 19: GpuUtilsUnitTests 19/77 Test #19: GpuUtilsUnitTests ......................... Passed 1.60 sec Start 20: HardwareUnitTests 20/77 Test #20: HardwareUnitTests ......................... Passed 1.61 sec Start 21: MathUnitTests 21/77 Test #21: MathUnitTests ............................. Passed 1.64 sec Start 22: MdrunUtilityUnitTests 22/77 Test #22: MdrunUtilityUnitTests ..................... Passed 1.59 sec Start 23: MdrunUtilityMpiUnitTests 23/77 Test #23: MdrunUtilityMpiUnitTests .................. Passed 1.62 sec Start 24: MDSpanTests 24/77 Test #24: MDSpanTests ............................... Passed 1.59 sec Start 25: MdtypesUnitTest 25/77 Test #25: MdtypesUnitTest ........................... Passed 1.60 sec Start 26: OnlineHelpUnitTests 26/77 Test #26: OnlineHelpUnitTests ....................... Passed 1.59 sec Start 27: OptionsUnitTests 27/77 Test #27: OptionsUnitTests .......................... Passed 1.59 sec Start 28: PbcutilUnitTest 28/77 Test #28: PbcutilUnitTest ........................... Passed 1.59 sec Start 29: RandomUnitTests 29/77 Test #29: RandomUnitTests ........................... Passed 1.59 sec Start 30: RestraintTests 30/77 Test #30: RestraintTests ............................ Passed 1.59 sec Start 31: TableUnitTests 31/77 Test #31: TableUnitTests ............................ Passed 1.65 sec Start 32: TaskAssignmentUnitTests 32/77 Test #32: TaskAssignmentUnitTests ................... Passed 1.59 sec Start 33: GmxTimingTests 33/77 Test #33: GmxTimingTests ............................ Passed 1.59 sec Start 34: TopologyTest 34/77 Test #34: TopologyTest .............................. Passed 1.61 sec Start 35: PullTest 35/77 Test #35: PullTest .................................. Passed 1.59 sec Start 36: SimdUnitTests 36/77 Test #36: SimdUnitTests ............................. Passed 1.62 sec Start 37: CompatibilityHelpersTests 37/77 Test #37: CompatibilityHelpersTests ................. Passed 1.59 sec Start 38: GmxAnaTest 38/77 Test #38: GmxAnaTest ................................ Passed 2.39 sec Start 39: GmxPreprocessTests 39/77 Test #39: GmxPreprocessTests ........................ Passed 2.47 sec Start 40: Pdb2gmx1Test 40/77 Test #40: Pdb2gmx1Test .............................. Passed 2.40 sec Start 41: Pdb2gmx2Test 41/77 Test #41: Pdb2gmx2Test .............................. Passed 2.69 sec Start 42: Pdb2gmx3Test 42/77 Test #42: Pdb2gmx3Test .............................. Passed 3.13 sec Start 43: CorrelationsTest 43/77 Test #43: CorrelationsTest .......................... Passed 2.51 sec Start 44: AnalysisDataUnitTests 44/77 Test #44: AnalysisDataUnitTests ..................... Passed 1.61 sec Start 45: CoordinateIOTests 45/77 Test #45: CoordinateIOTests ......................... Passed 1.64 sec Start 46: TrajectoryAnalysisUnitTests 46/77 Test #46: TrajectoryAnalysisUnitTests ............... Passed 7.86 sec Start 47: EnergyAnalysisUnitTests 47/77 Test #47: EnergyAnalysisUnitTests ................... Passed 1.73 sec Start 48: ToolUnitTests 48/77 Test #48: ToolUnitTests ............................. Passed 3.46 sec Start 49: FileIOTests 49/77 Test #49: FileIOTests ............................... Passed 1.60 sec Start 50: SelectionUnitTests 50/77 Test #50: SelectionUnitTests ........................ Passed 1.71 sec Start 51: MdrunOutputTests 51/77 Test #51: MdrunOutputTests .......................... Passed 1.71 sec Start 52: MdrunModulesTests 52/77 Test #52: MdrunModulesTests ......................... Passed 1.82 sec Start 53: MdrunIOTests 53/77 Test #53: MdrunIOTests .............................. Passed 1.73 sec Start 54: MdrunTestsOneRank 54/77 Test #54: MdrunTestsOneRank ......................... Passed 3.60 sec Start 55: MdrunTestsTwoRanks 55/77 Test #55: MdrunTestsTwoRanks ........................ Passed 3.52 sec Start 56: MdrunSingleRankAlgorithmsTests 56/77 Test #56: MdrunSingleRankAlgorithmsTests ............ Passed 3.16 sec Start 57: Minimize1RankTests 57/77 Test #57: Minimize1RankTests ........................ Passed 2.58 sec Start 58: Minimize2RankTests 58/77 Test #58: Minimize2RankTests ........................ Passed 2.61 sec Start 59: MdrunNonIntegratorTests 59/77 Test #59: MdrunNonIntegratorTests ................... Passed 1.62 sec Start 60: MdrunTpiTests 60/77 Test #60: MdrunTpiTests ............................. Passed 2.19 sec Start 61: MdrunMpiTests 61/77 Test #61: MdrunMpiTests ............................. Passed 2.06 sec Start 62: MdrunMultiSimTests 62/77 Test #62: MdrunMultiSimTests ........................ Passed 1.71 sec Start 63: MdrunMultiSimReplexTests 63/77 Test #63: MdrunMultiSimReplexTests .................. Passed 1.70 sec Start 64: MdrunMultiSimReplexEquivalenceTests 64/77 Test #64: MdrunMultiSimReplexEquivalenceTests ....... Passed 4.71 sec Start 65: MdrunMpi1RankPmeTests 65/77 Test #65: MdrunMpi1RankPmeTests ..................... Passed 2.50 sec Start 66: MdrunMpi2RankPmeTests 66/77 Test #66: MdrunMpi2RankPmeTests ..................... Passed 3.08 sec Start 67: MdrunCoordinationBasicTests1Rank 67/77 Test #67: MdrunCoordinationBasicTests1Rank .......... Passed 1.62 sec Start 68: MdrunCoordinationBasicTests2Ranks 68/77 Test #68: MdrunCoordinationBasicTests2Ranks ......... Passed 1.63 sec Start 69: MdrunCoordinationCouplingTests1Rank 69/77 Test #69: MdrunCoordinationCouplingTests1Rank ....... Passed 1.63 sec Start 70: MdrunCoordinationCouplingTests2Ranks 70/77 Test #70: MdrunCoordinationCouplingTests2Ranks ...... Passed 1.63 sec Start 71: MdrunCoordinationConstraintsTests1Rank 71/77 Test #71: MdrunCoordinationConstraintsTests1Rank .... Passed 1.63 sec Start 72: MdrunCoordinationConstraintsTests2Ranks 72/77 Test #72: MdrunCoordinationConstraintsTests2Ranks ... Passed 1.62 sec Start 73: MdrunFEPTests 73/77 Test #73: MdrunFEPTests ............................. Passed 1.60 sec Start 74: MdrunPullTests 74/77 Test #74: MdrunPullTests ............................ Passed 2.80 sec Start 75: MdrunRotationTests 75/77 Test #75: MdrunRotationTests ........................ Passed 1.73 sec Start 76: MdrunSimulatorComparison 76/77 Test #76: MdrunSimulatorComparison .................. Passed 1.60 sec Start 77: MdrunVirtualSiteTests 77/77 Test #77: MdrunVirtualSiteTests ..................... Passed 1.94 sec 100% tests passed, 0 tests failed out of 77 Label Time Summary: GTest = 259.47 sec*proc (77 tests) IntegrationTest = 138.93 sec*proc (22 tests) MpiTest = 132.96 sec*proc (21 tests) QuickGpuTest = 78.05 sec*proc (18 tests) SlowGpuTest = 86.60 sec*proc (14 tests) SlowTest = 38.32 sec*proc (13 tests) UnitTest = 82.21 sec*proc (42 tests) Total Test time (real) = 155.08 sec gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [100%] Built target run-ctest-nophys /usr/bin/gmake -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [100%] Built target missing-tests-notice /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/CMakeFiles/check.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' [100%] Built target check gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build/CMakeFiles 0 gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi/redhat-linux-build' + [[ openmpi = openmpi ]] ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + unset OMPI_MCA_rmaps_base_oversubscribe + popd + test -n openmpi + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; unset MPI_MAN; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset _LMFILES_; unset LOADEDMODULES; unset CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial_d + [[ '' = openmpi ]] + /usr/bin/cmake --build redhat-linux-build -j48 --verbose --target check Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 check /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 check gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/CMakeFiles 95 /usr/bin/gmake -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/CMakeFiles/gmx_objlib.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options 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cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/CMakeFiles/gmx_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". 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Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/build Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target gmx_objlib Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target linearalgebra Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target scanner Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Consolidate compiler generated dependencies of target energyanalysis /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". 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[ 0%] Generating release version information gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Dependencies file 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is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 0%] Building CXX object src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/external/googletest/googletest && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_LANG_CXX11 -Dgtest_EXPORTS -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/src/gtest-all.cc Consolidate compiler generated dependencies of target options Consolidate compiler generated dependencies of target thread_mpi gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 0%] Built target gmx_objlib /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build [ 1%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend [ 1%] Built target energyanalysis [ 1%] Built target scanner [ 2%] Built target mdrun_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling 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Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". [ 5%] Built target options Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target pulling gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/pulling/CMakeFiles/pulling.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Consolidate compiler generated dependencies of target colvars_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build [ 5%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/colvars_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". [ 7%] Built target colvars_objlib Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target taskassignment gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 7%] Built target taskassignment Consolidate compiler generated dependencies of target modularsimulator gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 9%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target libgromacs gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 62%] Built target libgromacs /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/depend /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/box.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/topology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/virials.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". [ 62%] Built target gmx /usr/bin/gmake -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/tests/CMakeFiles/gmxtests.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target gmxapi gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'api/gmxapi/CMakeFiles/gmxapi.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'tests/CMakeFiles/gmxtests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' Consolidate compiler generated dependencies of target nblib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/build [ 63%] Built target gmxapi gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 63%] Built target gmxtests [ 64%] Built target nblib /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake "--color=" Dependencies file "api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/compiler_depend.internal". Dependencies file "api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target argon-forces-integration Consolidate compiler generated dependencies of target methane-water-integration gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/methane-water-integration.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 65%] Built target argon-forces-integration [ 65%] Built target methane-water-integration [ 65%] Linking CXX shared library ../../../../lib/libgtest.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.13.0 -o ../../../../lib/libgtest.so.1.13.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o" cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgtest.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 65%] Built target gtest /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/external/googletest/googlemock 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -MD -MT src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/src/gmock-all.cc [ 65%] Linking CXX shared library ../../../../lib/libgmock.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.13.0 -o ../../../../lib/libgmock.so.1.13.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o" -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libgtest.so.1.13.0 cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgmock.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 65%] Built target gmock /usr/bin/gmake -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 65%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o [ 65%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o -MF CMakeFiles/testutils.dir/cmdlinetest.cpp.o.d -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c 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CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/test_device.cpp.o CMakeFiles/testutils.dir/test_hardware_environment.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/topologyhelpers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/trajectoryreader.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 66%] Built target testutils /usr/bin/gmake -f 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src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend /usr/bin/gmake -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/timing/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/timing/tests/CMakeFiles/timing-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/tests 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib_test_infrastructure.dir/build.make api/nblib/tests/CMakeFiles/nblib_test_infrastructure.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build.make src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/build.make 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Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build.make src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o /usr/bin/gmake -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 67%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o -MF CMakeFiles/utility-test.dir/alignedallocator.cpp.o.d -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/alignedallocator.cpp [ 67%] Building CXX object api/nblib/tests/CMakeFiles/nblib_test_infrastructure.dir/testsystems.cpp.o [ 67%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -MF CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o.d -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/mpitest.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 68%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib_test_infrastructure.dir/testsystems.cpp.o -MF CMakeFiles/nblib_test_infrastructure.dir/testsystems.cpp.o.d -o CMakeFiles/nblib_test_infrastructure.dir/testsystems.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/testsystems.cpp [ 68%] Building CXX object src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -MF CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o.d -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o -MF CMakeFiles/testutils-test.dir/interactivetest.cpp.o.d -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/interactivetest.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 68%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxlib/nonbonded/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/nonbonded/tests/nb_free_energy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmminputgenerator.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build [ 68%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/energyreader.cpp [ 68%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o /usr/bin/gmake -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build /usr/bin/gmake -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build [ 68%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o -MF CMakeFiles/listed_forces-test.dir/bonded.cpp.o.d -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/bonded.cpp /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 68%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfitting.cpp [ 68%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build [ 68%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -MF CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o.d -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o -MF CMakeFiles/domdec-test.dir/hashedmap.cpp.o.d -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/hashedmap.cpp /usr/bin/gmake -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 68%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 68%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o [ 69%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o -MF CMakeFiles/fft-test.dir/fft.cpp.o.d -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests/fft.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -MF CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o.d -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/arrayrefwithpadding.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd 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src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 69%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o [ 69%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o [ 69%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 69%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o [ 69%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -MF CMakeFiles/hardware-test.dir/cpuinfo.cpp.o.d -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/cpuinfo.cpp [ 69%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 69%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o -MF CMakeFiles/table-test.dir/splinetable.cpp.o.d -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/tests/splinetable.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/enerdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/enerdata.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/exponentialdistribution.cpp [ 69%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o -MF CMakeFiles/pull-test.dir/pull.cpp.o.d -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/tests/pull.cpp [ 69%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o -MF CMakeFiles/restraintpotential-test.dir/manager.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/tests/manager.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o -MF CMakeFiles/simd-test.dir/base.cpp.o.d -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/base.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -MF CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o.d -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/abstractoptionstorage.cpp [ 69%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o [ 69%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -MF CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o.d -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/accessor_policy.cpp [ 69%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o -MF CMakeFiles/compat-test.dir/mp11.cpp.o.d -o CMakeFiles/compat-test.dir/mp11.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/tests/mp11.cpp [ 69%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o [ 69%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o -MF CMakeFiles/correlations-test.dir/autocorr.cpp.o.d -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/autocorr.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/editconf.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/datatest.cpp [ 69%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o [ 69%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o [ 69%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o -MF CMakeFiles/tool-test.dir/dump.cpp.o.d -o CMakeFiles/tool-test.dir/dump.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/dump.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o -MF CMakeFiles/gmxana-test.dir/entropy.cpp.o.d -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/entropy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o -MF CMakeFiles/fileio-test.dir/checkpoint.cpp.o.d -o CMakeFiles/fileio-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/checkpoint.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/tests/energyterm.cpp [ 69%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_availability.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -MF CMakeFiles/correlations-test.dir/correlationdataset.cpp.o.d -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 69%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" 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-MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -MF CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o.d -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/refdata_tests.cpp [ 70%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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CMakeFiles/fileio-test.dir/confio.cpp.o.d -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/confio.cpp [ 70%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o -MF CMakeFiles/random-test.dir/gammadistribution.cpp.o.d -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/gammadistribution.cpp [ 70%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/observablesreducer.cpp [ 70%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 70%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_stream_manager.cpp [ 70%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o" "CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 70%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o -MF CMakeFiles/correlations-test.dir/expfit.cpp.o.d -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/expfit.cpp [ 70%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/restraintpotential-test.dir/manager.cpp.o" "CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/restraintpotential-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 70%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingamplitudelookup.cpp [ 70%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../../bin/timing-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/timing-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/timing-test.dir/timing.cpp.o" "CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/timing-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 70%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvars.cpp [ 70%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o" "CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 [ 70%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -MF CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 70%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/applied_forces-test.dir/electricfield.cpp.o" "CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 70%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernel_test.cpp [ 70%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a "CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o" "CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 70%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 [ 70%] Built target onlinehelp-test-shared /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pull-test.dir/pull.cpp.o" "CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/pulling.dir/output.cpp.o ../CMakeFiles/pulling.dir/pull.cpp.o ../CMakeFiles/pulling.dir/pull_rotation.cpp.o ../CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o ../CMakeFiles/pulling.dir/pullutil.cpp.o ../CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lmuparser -lm ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.4 [ 70%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_traj.cpp [ 70%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genion.cpp [ 70%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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70%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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&& /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 [ 70%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o -MF CMakeFiles/tool-test.dir/report_methods.cpp.o.d -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/report_methods.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o" "CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o" "CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/energyanalysis-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 70%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/ewald-test.dir/pmegathertest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmegathertest.cpp [ 70%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 [ 70%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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CMakeFiles/random-test.dir/normaldistribution.cpp.o.d -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/normaldistribution.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/compat-test.dir/mp11.cpp.o" "CMakeFiles/compat-test.dir/pointers.cpp.o" "CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/compat-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 70%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a "CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o" "CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 70%] Built target mdrunutility-test-shared [ 70%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o -MF CMakeFiles/tool-test.dir/trjconv.cpp.o.d -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/trjconv.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/moduletest.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 70%] Built target utility-mpi-test [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulatorcomparison.cpp [ 70%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o -MF CMakeFiles/pbcutil-test.dir/mshift.cpp.o.d -o CMakeFiles/pbcutil-test.dir/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/mshift.cpp [ 71%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingforceprovider.cpp [ 71%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 71%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmoptions.cpp [ 71%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o" "CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o ../CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o ../CMakeFiles/taskassignment.dir/findallgputasks.cpp.o ../CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o ../CMakeFiles/taskassignment.dir/resourcedivision.cpp.o ../CMakeFiles/taskassignment.dir/taskassignment.cpp.o ../CMakeFiles/taskassignment.dir/usergpuids.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o -MF CMakeFiles/utility-test.dir/arrayref.cpp.o.d -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/arrayref.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 71%] Built target restraintpotential-test [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/booltype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/booltype.cpp.o -MF CMakeFiles/utility-test.dir/booltype.cpp.o.d -o CMakeFiles/utility-test.dir/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/booltype.cpp [ 71%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -MF CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o.d -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/outputadapters.cpp [ 71%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/domdec-test.dir/hashedmap.cpp.o" "CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o" "CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 71%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../bin/domdec-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o" "CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o -MF CMakeFiles/utility-test.dir/bitmask32.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask32.cpp [ 71%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CMakeFiles/nblib_test_infrastructure.dir/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/nblib_test_infrastructure.dir/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 72%] Built target testutils-mpi-test [ 72%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o.d -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/testasserts_tests.cpp [ 72%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 72%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx2-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 72%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx1-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/simd-test.dir/scalar_math.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar_math.cpp [ 72%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingoptions.cpp [ 72%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o -MF CMakeFiles/random-test.dir/seed.cpp.o.d -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/seed.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 72%] Built target applied_forces-test [ 72%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o -MF CMakeFiles/utility-test.dir/bitmask64.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask64.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/fft-test.dir/fft.cpp.o" "CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fft-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbc.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/pbc.cpp [ 72%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx3-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o -MF CMakeFiles/hardware-test.dir/device_management.cpp.o.d -o CMakeFiles/hardware-test.dir/device_management.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/device_management.cpp [ 72%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/terminationhelper.cpp [ 72%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gen_maxwell_velocities.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 72%] Built target compat-test [ 72%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 72%] Linking CXX static library ../../../lib/libnblib_test_infrastructure.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -P CMakeFiles/nblib_test_infrastructure.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib_test_infrastructure.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libnblib_test_infrastructure.a CMakeFiles/nblib_test_infrastructure.dir/testsystems.cpp.o CMakeFiles/nblib_test_infrastructure.dir/__/__/__/src/testutils/unittest_main.cpp.o /usr/bin/ranlib ../../../lib/libnblib_test_infrastructure.a [ 72%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o -MF CMakeFiles/fileio-test.dir/filetypes.cpp.o.d -o CMakeFiles/fileio-test.dir/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/filetypes.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 72%] Built target nblib_test_infrastructure [ 72%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectorycomparison.cpp [ 72%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o -MF CMakeFiles/mdspan-test.dir/mdspan.cpp.o.d -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/mdspan.cpp [ 72%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/correlations-test.dir/autocorr.cpp.o" "CMakeFiles/correlations-test.dir/correlationdataset.cpp.o" "CMakeFiles/correlations-test.dir/expfit.cpp.o" "CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o" "CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/correlations-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 72%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gmxana-test.dir/entropy.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o" "CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxana-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 72%] Built target domdec-mpi-test [ 73%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/topology-test.dir/index.cpp.o.d -o CMakeFiles/topology-test.dir/index.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/index.cpp [ 73%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o.d -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/xvgtest_tests.cpp [ 73%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/pbcenums.cpp [ 73%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmforceprovider.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 73%] Built target energyanalysis-test [ 73%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o -MF CMakeFiles/tool-test.dir/convert-tpr.cpp.o.d -o CMakeFiles/tool-test.dir/convert-tpr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/convert-tpr.cpp [ 73%] Linking CXX executable ../../../../../bin/nonbonded-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nonbonded-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o" "CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/nonbonded-fep-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.9.0.0 -lm ../../../../../lib/libgmock.so.1.13.0 ../../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 73%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd 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-MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestdata.cpp [ 73%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/math-test.dir/densityfit.cpp.o.d -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/densityfit.cpp [ 73%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto 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../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 73%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o -MF CMakeFiles/awh-test.dir/biasgrid.cpp.o.d -o CMakeFiles/awh-test.dir/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biasgrid.cpp [ 73%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/listed_forces/tests && 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -MF CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o.d -o CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/position_restraints.cpp [ 73%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o -MF CMakeFiles/coordinateio-test.dir/register.cpp.o.d -o CMakeFiles/coordinateio-test.dir/register.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/register.cpp [ 74%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o -MF CMakeFiles/coordinateio-test.dir/requirements.cpp.o.d -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/requirements.cpp [ 75%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernelsetup.cpp [ 75%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 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-MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -MF CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_buffer.cpp [ 75%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmm.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/gpueventsynchronizer.cpp [ 75%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o" "CMakeFiles/mdspan-test.dir/extents.cpp.o" "CMakeFiles/mdspan-test.dir/extensions.cpp.o" "CMakeFiles/mdspan-test.dir/layouts.cpp.o" "CMakeFiles/mdspan-test.dir/mdspan.cpp.o" "CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdspan-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 75%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o -MF CMakeFiles/mdlib-test.dir/ebin.cpp.o.d -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/ebin.cpp [ 77%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pbcutil-test.dir/com.cpp.o" "CMakeFiles/pbcutil-test.dir/mshift.cpp.o" "CMakeFiles/pbcutil-test.dir/pbc.cpp.o" "CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o" "CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pbcutil-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 77%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o -MF CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o.d -o CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/energydrifttracker.cpp [ 77%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/testutils-test.dir/interactivetest.cpp.o" "CMakeFiles/testutils-test.dir/refdata_tests.cpp.o" "CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o" "CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o" "CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 [ 77%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/filenameoptionmanager.cpp [ 77%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a "CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 77%] Built target correlations-test /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a [ 77%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/options-test.dir/option.cpp.o.d -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/option.cpp [ 77%] Linking CXX executable ../../../../../bin/density_fitting_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/density_fitting_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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/usr/lib64/libpthread.a ../../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 77%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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[ 77%] Built target analysisdata-test-shared [ 77%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o [ 77%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -MF CMakeFiles/coordinateio-test.dir/setatoms.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setatoms.cpp [ 77%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o -MF CMakeFiles/math-test.dir/functions.cpp.o.d -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/functions.cpp [ 77%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o -MF CMakeFiles/awh-test.dir/biassharing.cpp.o.d -o CMakeFiles/awh-test.dir/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biassharing.cpp [ 77%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/hardware-test.dir/cpuinfo.cpp.o" "CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/device_management.cpp.o" "CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/hardware-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 77%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o -MF CMakeFiles/topology-test.dir/symtab.cpp.o.d -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/symtab.cpp /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend [ 77%] Linking CXX static library ../../../../lib/libmdrun_test_infrastructure.a cd 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o [ 77%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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../../../../lib/libmdrun_test_infrastructure.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 77%] Built target mdrun_test_infrastructure [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 77%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 [ 77%] Built target fft-test /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/tool-test.dir/dump.cpp.o" "CMakeFiles/tool-test.dir/helpwriting.cpp.o" "CMakeFiles/tool-test.dir/make_ndx.cpp.o" "CMakeFiles/tool-test.dir/report_methods.cpp.o" "CMakeFiles/tool-test.dir/trjconv.cpp.o" "CMakeFiles/tool-test.dir/convert-tpr.cpp.o" "CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/tool-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 77%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -MF CMakeFiles/mdlib-test.dir/energyoutput.cpp.o.d -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/energyoutput.cpp [ 77%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/grompp_directives.cpp /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-integration-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-integration-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-integration-test.dir/nbkernelsystem.cpp.o -MF CMakeFiles/nblib-integration-test.dir/nbkernelsystem.cpp.o.d -o CMakeFiles/nblib-integration-test.dir/nbkernelsystem.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/nbkernelsystem.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 78%] Built target gmxana-test [ 78%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp [ 78%] Linking CXX executable ../../../../bin/nbnxm-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nbnxm-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nbnxm-test.dir/exclusions.cpp.o" "CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o" "CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o" "CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/nbnxm-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 78%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/massrepartitioning.cpp [ 78%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-o CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 78%] Built target pdb2gmx2-test [ 78%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 78%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG 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../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 78%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/readir.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 78%] Built target density_fitting_applied_forces-test [ 78%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o -MF CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o.d -o CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/multipletimestepping.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdlib-test.dir/expanded.cpp.o.d -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/expanded.cpp [ 78%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/awh-test.dir/biasstate.cpp.o.d -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biasstate.cpp [ 80%] Linking CXX executable ../../../../../bin/qmmm_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/qmmm_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/qmmm_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.9.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgtest.so.1.13.0 [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 80%] Linking CXX executable ../../../../../bin/colvars_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/colvars_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/colvars_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.9.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm ../../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 80%] Built target pdb2gmx3-test [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -MF CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o.d -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.cpp [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o -MF CMakeFiles/ewald-test.dir/pme.cpp.o.d -o CMakeFiles/ewald-test.dir/pme.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pme.cpp [ 80%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/random-test.dir/exponentialdistribution.cpp.o" "CMakeFiles/random-test.dir/gammadistribution.cpp.o" "CMakeFiles/random-test.dir/normaldistribution.cpp.o" "CMakeFiles/random-test.dir/seed.cpp.o" "CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o" "CMakeFiles/random-test.dir/threefry.cpp.o" "CMakeFiles/random-test.dir/uniformintdistribution.cpp.o" "CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o" "CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/random-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 80%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o -MF CMakeFiles/simd-test.dir/simd_integer.cpp.o.d -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_integer.cpp [ 80%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/selection-test.dir/poscalc.cpp.o.d -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/poscalc.cpp /usr/bin/gmake -f api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/build.make api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/build.make api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 80%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/build.make api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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-MT api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/setup.cpp.o -MF CMakeFiles/nblib-util-test.dir/setup.cpp.o.d -o CMakeFiles/nblib-util-test.dir/setup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/util/tests/setup.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 81%] Built target table-test [ 81%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -MF CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o.d -o CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/bias_fep_lambda_state.cpp [ 81%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o -MF CMakeFiles/selection-test.dir/selectioncollection.cpp.o.d -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/selectioncollection.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 81%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/listed_forces-test.dir/bonded.cpp.o" "CMakeFiles/listed_forces-test.dir/pairs.cpp.o" "CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o" "CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/listed_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 81%] Built target pdb2gmx1-test [ 81%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o -MF CMakeFiles/selection-test.dir/selectionoption.cpp.o.d -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/selectionoption.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -MF CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setstarttime.cpp [ 82%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/gmxcalculator.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake "--color=" [ 82%] Built target mdspan-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 82%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 82%] Built target pbcutil-test [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o -MF CMakeFiles/fileio-test.dir/readinp.cpp.o.d -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/readinp.cpp [ 82%] Building CXX object api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/traits.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/util/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/util/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/util/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o -MF CMakeFiles/utility-test.dir/cstringutil.cpp.o.d -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/cstringutil.cpp [ 82%] Linking CXX executable ../../../bin/nblib-integration-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-integration-test.dir/link.txt --verbose=1 [ 83%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/helpers.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-integration-test.dir/gmxcalculator.cpp.o" "CMakeFiles/nblib-integration-test.dir/nbkernelsystem.cpp.o" "CMakeFiles/nblib-integration-test.dir/simstate.cpp.o" "CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-integration-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o -MF CMakeFiles/math-test.dir/invertmatrix.cpp.o.d -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/invertmatrix.cpp [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o -MF CMakeFiles/options-test.dir/repeatingsection.cpp.o.d -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/repeatingsection.cpp [ 83%] Linking CXX executable ../../../bin/nblib-integrator-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-integrator-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-integrator-test.dir/integrator.cpp.o" "CMakeFiles/nblib-integrator-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-integrator-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a [ 83%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o -MF CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o.d -o CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/freeenergyparameters.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 83%] Built target colvars_applied_forces-test [ 83%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -MF CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 83%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -MF CMakeFiles/coordinateio-test.dir/settimestep.cpp.o.d -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/settimestep.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o -MF CMakeFiles/math-test.dir/matrix.cpp.o.d -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/matrix.cpp [ 83%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 83%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/topology-test.dir/atoms.cpp.o" "CMakeFiles/topology-test.dir/exclusionblocks.cpp.o" "CMakeFiles/topology-test.dir/idef.cpp.o" "CMakeFiles/topology-test.dir/index.cpp.o" "CMakeFiles/topology-test.dir/mtop.cpp.o" "CMakeFiles/topology-test.dir/symtab.cpp.o" "CMakeFiles/topology-test.dir/topsort.cpp.o" "CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/topology-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 83%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/defaultinitializationallocator.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 83%] Built target hardware-test [ 83%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/selection-test.dir/toputils.cpp.o.d -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/toputils.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 83%] Built target testutils-test [ 83%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/nblib-util-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/util/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-util-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-util-test.dir/setup.cpp.o" "CMakeFiles/nblib-util-test.dir/traits.cpp.o" "CMakeFiles/nblib-util-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../../bin/nblib-util-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libnblib_test_infrastructure.a ../../../../lib/libnblib_gmx.so.0.1.0 ../../../../lib/libtestutils.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a [ 83%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/listedtesthelpers.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o -MF CMakeFiles/simd-test.dir/simd4.cpp.o.d -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 83%] Built target qmmm_applied_forces-test [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o -MF CMakeFiles/options-test.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/timeunitmanager.cpp [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/topdirs.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 83%] Built target tool-test [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -MF CMakeFiles/coordinateio-test.dir/testmodule.cpp.o.d -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/testmodule.cpp [ 84%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -MF CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 84%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 84%] Built target random-test [ 84%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 84%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlineparser.cpp [ 85%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o -MF CMakeFiles/fileio-test.dir/xvgio.cpp.o.d -o CMakeFiles/fileio-test.dir/xvgio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/xvgio.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -MF CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o.d -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/inmemoryserializer.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o -MF CMakeFiles/math-test.dir/neldermead.cpp.o.d -o CMakeFiles/math-test.dir/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/neldermead.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 85%] Built target listed_forces-test [ 85%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" 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CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/typetests.cpp [ 86%] Linking CXX executable ../../../../bin/mdtypes-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdtypes-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdtypes-test.dir/enerdata.cpp.o" "CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o" "CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o" "CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o" "CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o" "CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdtypes-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 86%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o" "CMakeFiles/ewald-test.dir/pmegathertest.cpp.o" "CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o" "CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o" "CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o" "CMakeFiles/ewald-test.dir/pme.cpp.o" "CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/ewald-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 86%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 86%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestdata.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 86%] Built target nblib-util-test [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -MF CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o.d -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 86%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/coordinateio-test.dir/builder.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o" "CMakeFiles/coordinateio-test.dir/register.cpp.o" "CMakeFiles/coordinateio-test.dir/requirements.cpp.o" "CMakeFiles/coordinateio-test.dir/setatoms.cpp.o" "CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o" "CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o" "CMakeFiles/coordinateio-test.dir/settimestep.cpp.o" "CMakeFiles/coordinateio-test.dir/testmodule.cpp.o" "CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/coordinateio-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 86%] Built target nblib-integrator-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o -MF CMakeFiles/math-test.dir/optimization.cpp.o.d -o CMakeFiles/math-test.dir/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/optimization.cpp [ 86%] Built target gpu_utils-test [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 86%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/calculator.cpp [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -MF CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o.d -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o -MF CMakeFiles/math-test.dir/paddedvector.cpp.o.d -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/paddedvector.cpp [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -MF CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o.d -o CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/parrinellorahman.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o -MF CMakeFiles/math-test.dir/vectypes.cpp.o.d -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/vectypes.cpp [ 86%] Linking CXX executable ../../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/awh-test.dir/awh_setup.cpp.o" "CMakeFiles/awh-test.dir/bias.cpp.o" "CMakeFiles/awh-test.dir/biasgrid.cpp.o" "CMakeFiles/awh-test.dir/biassharing.cpp.o" "CMakeFiles/awh-test.dir/biasstate.cpp.o" "CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o" "CMakeFiles/awh-test.dir/friction_metric.cpp.o" "CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/awh-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.9.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake "--color=" [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o -MF CMakeFiles/commandline-test.dir/filenm.cpp.o.d -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/filenm.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 86%] Built target topology-test [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp In file included from /usr/include/c++/14/istream:41, from /usr/include/c++/14/sstream:40, from /usr/include/c++/14/bits/quoted_string.h:38, from /usr/include/c++/14/iomanip:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest.h:54, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include/testutils/testasserts.h:64, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:53: In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘testing::Message::operator<< (double const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (double const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:397:86: /usr/include/c++/14/ostream:229:25: warning: ‘maxUlpDiffPos’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:281:23: note: ‘maxUlpDiffPos’ was declared here 281 | real maxUlpDiffPos; | ^~~~~~~~~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘testing::Message::operator<< (double const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (double const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:399:63: /usr/include/c++/14/ostream:229:25: warning: ‘refValMaxUlpDiff’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:282:23: note: ‘refValMaxUlpDiff’ was declared here 282 | real refValMaxUlpDiff, simdValMaxUlpDiff; | ^~~~~~~~~~~~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘testing::Message::operator<< (double const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (double const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:400:63: /usr/include/c++/14/ostream:229:25: warning: ‘simdValMaxUlpDiff’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:282:41: note: ‘simdValMaxUlpDiff’ was declared here 282 | real refValMaxUlpDiff, simdValMaxUlpDiff; | ^~~~~~~~~~~~~~~~~ /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpformat.cpp /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake "--color=" [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o -MF CMakeFiles/simd-test.dir/simd4_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_math.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 86%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -MF CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o.d -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/analysisdata.cpp [ 86%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o" "CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o" "CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 86%] Built target nblib-integration-test [ 86%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/conversions.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o -MF CMakeFiles/utility-test.dir/logger.cpp.o.d -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/logger.cpp [ 86%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -MF CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/compressed_x_output.cpp [ 86%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/densityfittingmodule.cpp [ 86%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/listed_forces/tests/transformations.cpp [ 86%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o -MF CMakeFiles/analysisdata-test.dir/histogram.cpp.o.d -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/histogram.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 86%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -MF CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/checkpoint.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 86%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o -MF CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o.d -o CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multiple_time_stepping.cpp [ 87%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o" "CMakeFiles/options-test.dir/filenameoption.cpp.o" "CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o" "CMakeFiles/options-test.dir/option.cpp.o" "CMakeFiles/options-test.dir/optionsassigner.cpp.o" "CMakeFiles/options-test.dir/repeatingsection.cpp.o" "CMakeFiles/options-test.dir/timeunitmanager.cpp.o" "CMakeFiles/options-test.dir/treesupport.cpp.o" "CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/options-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/dispersion_correction.cpp [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/interactiveMD.cpp [ 87%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -MF CMakeFiles/mdrun-test.dir/swapcoords.cpp.o.d -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/swapcoords.cpp [ 87%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -MF CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/exactcontinuation.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o" "CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 87%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/fileio-test.dir/checkpoint.cpp.o" "CMakeFiles/fileio-test.dir/confio.cpp.o" "CMakeFiles/fileio-test.dir/filemd5.cpp.o" "CMakeFiles/fileio-test.dir/filetypes.cpp.o" "CMakeFiles/fileio-test.dir/mrcserializer.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o" "CMakeFiles/fileio-test.dir/readinp.cpp.o" "CMakeFiles/fileio-test.dir/timecontrol.cpp.o" "CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o" "CMakeFiles/fileio-test.dir/tngio.cpp.o" "CMakeFiles/fileio-test.dir/xvgio.cpp.o" "CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fileio-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 87%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -MF CMakeFiles/analysisdata-test.dir/lifetime.cpp.o.d -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/lifetime.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o -MF CMakeFiles/utility-test.dir/message_string_collector.cpp.o.d -o CMakeFiles/utility-test.dir/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/message_string_collector.cpp [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -MF CMakeFiles/mdrun-io-test.dir/grompp.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/grompp.cpp [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/ewaldsurfaceterm.cpp [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 87%] Built target mdrunutility-test [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 87%] Built target gmxpreprocess-test [ 88%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/simd-test.dir/base.cpp.o" "CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o" "CMakeFiles/simd-test.dir/scalar.cpp.o" "CMakeFiles/simd-test.dir/scalar_util.cpp.o" "CMakeFiles/simd-test.dir/scalar_math.cpp.o" "CMakeFiles/simd-test.dir/simd.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o" "CMakeFiles/simd-test.dir/simd_integer.cpp.o" "CMakeFiles/simd-test.dir/simd_math.cpp.o" "CMakeFiles/simd-test.dir/simd_memory.cpp.o" "CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/simd4.cpp.o" "CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd4_math.cpp.o" "CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/simd-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 88%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -MF CMakeFiles/mdrun-test.dir/freezegroups.cpp.o.d -o CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/freezegroups.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 88%] Built target ewald-test [ 88%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -MF CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/outputfiles.cpp [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o -MF CMakeFiles/utility-test.dir/path.cpp.o.d -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/path.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/mimic.cpp [ 90%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o" "CMakeFiles/commandline-test.dir/filenm.cpp.o" "CMakeFiles/commandline-test.dir/pargs.cpp.o" "CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/commandline-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/minimize.cpp.o -MF CMakeFiles/minimize-test.dir/minimize.cpp.o.d -o CMakeFiles/minimize-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/minimize.cpp [ 90%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o" "CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/onlinehelp-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 90%] Built target coordinateio-test [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -MF CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o.d -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 90%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -MF CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectory_writing.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o -MF CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o.d -o CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/constantacceleration.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 90%] Built target mdtypes-test [ 90%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 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src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o -MF CMakeFiles/utility-test.dir/range.cpp.o.d -o CMakeFiles/utility-test.dir/range.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/range.cpp [ 91%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -MF CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o.d -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/simulationsignal.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 91%] Built target mdrunutility-mpi-test [ 91%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 91%] Built target awh-test [ 91%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o -MF CMakeFiles/utility-test.dir/strconvert.cpp.o.d -o CMakeFiles/utility-test.dir/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/strconvert.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY 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CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o.d -o CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/boxdeformation.cpp [ 91%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o [ 91%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/distance.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o -MF CMakeFiles/mdlib-test.dir/updategroups.cpp.o.d -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/updategroups.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build 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-DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/nonbonded_bench.cpp [ 91%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -MF CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o.d -o CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/stringtoenumvalueconverter.cpp [ 91%] Linking CXX executable ../../../../bin/mdrun-modules-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o" "CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o" "CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 91%] Built target onlinehelp-test [ 91%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/normalmodes.cpp [ 92%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/stringutil.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 92%] Built target fileio-test [ 92%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp [ 93%] Linking CXX executable ../../../../bin/mdrun-single-rank-algorithms-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-single-rank-algorithms-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-single-rank-algorithms-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o -MF CMakeFiles/utility-test.dir/template_mp.cpp.o.d -o CMakeFiles/utility-test.dir/template_mp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/template_mp.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/rerun.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -MF CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o.d -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/tpitest.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simple_mdrun.cpp [ 93%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners_gpu.cpp [ 93%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/freevolume.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisim.cpp [ 93%] Linking CXX executable ../../../../bin/mdrun-output-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o" "CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o" "CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o" "CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o" "CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisimtest.cpp [ 93%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o" "CMakeFiles/analysisdata-test.dir/arraydata.cpp.o" "CMakeFiles/analysisdata-test.dir/average.cpp.o" "CMakeFiles/analysisdata-test.dir/histogram.cpp.o" "CMakeFiles/analysisdata-test.dir/lifetime.cpp.o" "CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/analysisdata-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/hbond.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/utility-test.dir/textreader.cpp.o.d -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/textreader.cpp [ 94%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestrunners_gpu.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends 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src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o -MF CMakeFiles/utility-test.dir/textwriter.cpp.o.d -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/textwriter.cpp [ 94%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o -MF CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o.d -o CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/mdgpugraph.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-io-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o" "CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o" "CMakeFiles/mdrun-io-test.dir/grompp.cpp.o" "CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o" "CMakeFiles/mdrun-io-test.dir/termination.cpp.o" "CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 94%] Linking CXX executable ../../../../bin/minimize-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimize-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/minimize-test.dir/minimize.cpp.o" "CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/minimize-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/replicaexchange.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisimtest.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/replicaexchange_equivalence.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o -MF CMakeFiles/utility-test.dir/typetraits.cpp.o.d -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/typetraits.cpp [ 94%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-tpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o" "CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 95%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 95%] Built target mdrun-single-rank-algorithms-test [ 95%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o" "CMakeFiles/mdrun-test.dir/swapcoords.cpp.o" "CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o" "CMakeFiles/mdrun-test.dir/freezegroups.cpp.o" "CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o" "CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o" "CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/rdf.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/sasa.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/select.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/scattering.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 95%] Built target simd-test [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/unionfind.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pmetest.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 95%] Built target mdrun-output-test [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_basic.cpp [ 95%] Linking CXX executable ../../../../bin/nblib-listed-forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-listed-forces-test.dir/link.txt --verbose=1 [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../../bin/nblib-listed-forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libnblib_test_infrastructure.a ../../../../lib/libnblib_gmx.so.0.1.0 ../../../../lib/libtestutils.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 95%] Built target selection-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp [ 96%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o" "CMakeFiles/mdlib-test.dir/calcvir.cpp.o" "CMakeFiles/mdlib-test.dir/constr.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/ebin.cpp.o" "CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o" "CMakeFiles/mdlib-test.dir/energyoutput.cpp.o" "CMakeFiles/mdlib-test.dir/expanded.cpp.o" "CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrog.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o" "CMakeFiles/mdlib-test.dir/settle.cpp.o" "CMakeFiles/mdlib-test.dir/settletestdata.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/shake.cpp.o" "CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o" "CMakeFiles/mdlib-test.dir/updategroups.cpp.o" "CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o" "CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdlib-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_coupling.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_constraints.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-multisim-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o" 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/freeenergy.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/pull.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pull.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pull_rotation.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Built target minimize-test [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulator.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Built target mdrun-io-test [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 96%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/depend gmake[3]: Entering directory 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/restraint.cpp.o -MF CMakeFiles/gmxapi-test.dir/restraint.cpp.o.d -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests/restraint.cpp /usr/bin/gmake -f api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/workflow/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/workflow/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Building CXX object api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/workflow/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/workflow/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/workflow.cpp.o -MF CMakeFiles/workflow-details-test.dir/workflow.cpp.o.d -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/workflow/tests/workflow.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Built target mdrun-tpi-test [ 96%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/runner.cpp.o cd 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/runner.cpp.o -MF CMakeFiles/gmxapi-test.dir/runner.cpp.o.d -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests/runner.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Built target options-test [ 96%] Building CXX object api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/workflow/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/workflow/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include 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-MT api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/status.cpp.o -MF CMakeFiles/gmxapi-test.dir/status.cpp.o.d -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests/status.cpp /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-setup-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-setup-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/box.cpp [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/interactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/interactions.cpp.o -MF CMakeFiles/nblib-setup-test.dir/interactions.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/interactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/interactions.cpp /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-test.dir/link.txt --verbose=1 [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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"CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Built target mdrun-test [ 96%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -MF CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o.d -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests/stopsignaler.cpp [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/particletype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/particletype.cpp.o -MF CMakeFiles/nblib-setup-test.dir/particletype.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/particletype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/particletype.cpp [ 96%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/utility-test.dir/alignedallocator.cpp.o" "CMakeFiles/utility-test.dir/arrayref.cpp.o" "CMakeFiles/utility-test.dir/booltype.cpp.o" "CMakeFiles/utility-test.dir/bitmask32.cpp.o" 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"CMakeFiles/utility-test.dir/textreader.cpp.o" "CMakeFiles/utility-test.dir/textwriter.cpp.o" "CMakeFiles/utility-test.dir/typetraits.cpp.o" "CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 96%] Built target analysisdata-test [ 96%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o -MF CMakeFiles/gmxapi-test.dir/system.cpp.o.d -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests/system.cpp [ 96%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/version.cpp.o [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o -MF CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/pbcholder.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 96%] Built target mdrun-multisim-test [ 96%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/virials.cpp.o -MF CMakeFiles/nblib-setup-test.dir/virials.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/virials.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests/virials.cpp [ 97%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 97%] Linking CXX executable ../../../../bin/mdrun-mpi-pme-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-pme-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o" "CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-pme-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 98%] Linking CXX executable ../../../../../bin/workflow-details-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/workflow-details-test.dir/workflow.cpp.o" "CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o" ../../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.4.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgmock.so.1.13.0 ../../../../../lib/libgtest.so.1.13.0 [ 98%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/nblib-setup-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-multisim-replex-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Linking CXX executable ../../../bin/nblib-tpr-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-tpr-test.dir/link.txt --verbose=1 [ 98%] Built target mdrun-mpi-test /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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/usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a [ 98%] Linking CXX executable ../../../../bin/mdrun-coordination-basic-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-basic-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-basic-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdlib-test [ 98%] Linking CXX executable ../../../../bin/mdrun-coordination-coupling-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-coupling-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-coupling-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 98%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o" "CMakeFiles/math-test.dir/boxmatrix.cpp.o" "CMakeFiles/math-test.dir/coordinatetransformation.cpp.o" "CMakeFiles/math-test.dir/densityfit.cpp.o" "CMakeFiles/math-test.dir/dofit.cpp.o" "CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o" "CMakeFiles/math-test.dir/functions.cpp.o" "CMakeFiles/math-test.dir/gausstransform.cpp.o" "CMakeFiles/math-test.dir/densityfittingforce.cpp.o" "CMakeFiles/math-test.dir/invertmatrix.cpp.o" "CMakeFiles/math-test.dir/matrix.cpp.o" "CMakeFiles/math-test.dir/multidimarray.cpp.o" "CMakeFiles/math-test.dir/neldermead.cpp.o" "CMakeFiles/math-test.dir/optimization.cpp.o" "CMakeFiles/math-test.dir/paddedvector.cpp.o" "CMakeFiles/math-test.dir/vectypes.cpp.o" "CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/math-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 98%] Linking CXX executable ../../../../bin/mdrun-coordination-constraints-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-constraints-test.dir/link.txt --verbose=1 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-constraints-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 98%] Built target mdrun-non-integrator-test [ 98%] Linking CXX executable ../../../../bin/gmxapi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gmxapi-test.dir/restraint.cpp.o" "CMakeFiles/gmxapi-test.dir/runner.cpp.o" "CMakeFiles/gmxapi-test.dir/status.cpp.o" "CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o" "CMakeFiles/gmxapi-test.dir/system.cpp.o" "CMakeFiles/gmxapi-test.dir/version.cpp.o" "CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o" ../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgmxapi_d.so.0.4.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target workflow-details-test [ 98%] Linking CXX executable ../../../../bin/mdrun-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o" "CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-fep-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 98%] Linking CXX executable ../../../../bin/mdrun-rotation-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-rotation-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o" "CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-rotation-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 98%] Linking CXX executable ../../../../bin/mdrun-simulator-comparison-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-simulator-comparison-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o" "CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-simulator-comparison-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target utility-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-mpi-pme-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target nblib-tpr-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target trajectoryanalysis-test [ 98%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-equivalence-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-equivalence-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 98%] Linking CXX executable ../../../../bin/mdrun-vsites-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-vsites-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o" "CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-vsites-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-coordination-basic-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target math-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-coordination-coupling-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target gmxapi-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-coordination-constraints-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-fep-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-simulator-comparison-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-rotation-test [ 98%] Linking CXX executable ../../../../bin/mdrun-pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-pull-test.dir/pull.cpp.o" "CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-pull-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-multisim-replex-equivalence-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-vsites-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target mdrun-pull-test [ 98%] Linking CXX executable ../../../bin/nblib-setup-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-setup-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-setup-test.dir/box.cpp.o" "CMakeFiles/nblib-setup-test.dir/interactions.cpp.o" "CMakeFiles/nblib-setup-test.dir/particletype.cpp.o" "CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o" "CMakeFiles/nblib-setup-test.dir/molecules.cpp.o" "CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o" "CMakeFiles/nblib-setup-test.dir/topology.cpp.o" "CMakeFiles/nblib-setup-test.dir/virials.cpp.o" "CMakeFiles/nblib-setup-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-setup-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libmdrun_test_infrastructure.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target nblib-setup-test /usr/bin/gmake -f api/nblib/CMakeFiles/nblib-tests.dir/build.make api/nblib/CMakeFiles/nblib-tests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/nblib /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib-tests.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/CMakeFiles/nblib-tests.dir/build.make api/nblib/CMakeFiles/nblib-tests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib-tests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target nblib-tests /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/CMakeFiles/tests.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [ 98%] Built target tests /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build Connected to MAKE jobserver Start 1: GmxapiExternalInterfaceTests 1/89 Test #1: GmxapiExternalInterfaceTests .............. Passed 2.39 sec Start 2: GmxapiInternalInterfaceTests 2/89 Test #2: GmxapiInternalInterfaceTests .............. Passed 0.77 sec Start 3: NbLibListedForcesTests 3/89 Test #3: NbLibListedForcesTests .................... Passed 0.04 sec Start 4: NbLibSamplesTestArgon 4/89 Test #4: NbLibSamplesTestArgon ..................... Passed 0.02 sec Start 5: NbLibSamplesTestMethaneWater 5/89 Test #5: NbLibSamplesTestMethaneWater .............. Passed 0.02 sec Start 6: NbLibUtilTests 6/89 Test #6: NbLibUtilTests ............................ Passed 0.02 sec Start 7: NbLibSetupTests 7/89 Test #7: NbLibSetupTests ........................... Passed 0.03 sec Start 8: NbLibTprTests 8/89 Test #8: NbLibTprTests ............................. Passed 0.04 sec Start 9: NbLibIntegrationTests 9/89 Test #9: NbLibIntegrationTests ..................... Passed 0.02 sec Start 10: NbLibIntegratorTests 10/89 Test #10: NbLibIntegratorTests ...................... Passed 0.02 sec Start 11: TestUtilsUnitTests 11/89 Test #11: TestUtilsUnitTests ........................ Passed 0.03 sec Start 12: TestUtilsMpiUnitTests 12/89 Test #12: TestUtilsMpiUnitTests ..................... Passed 0.02 sec Start 13: UtilityUnitTests 13/89 Test #13: UtilityUnitTests .......................... Passed 0.03 sec Start 14: UtilityMpiUnitTests 14/89 Test #14: UtilityMpiUnitTests ....................... Passed 0.02 sec Start 15: GmxlibTests 15/89 Test #15: GmxlibTests ............................... Passed 0.04 sec Start 16: MdlibUnitTest 16/89 Test #16: MdlibUnitTest ............................. Passed 0.20 sec Start 17: AwhTest 17/89 Test #17: AwhTest ................................... Passed 0.07 sec Start 18: DensityFittingAppliedForcesUnitTest 18/89 Test #18: DensityFittingAppliedForcesUnitTest ....... Passed 0.02 sec Start 19: QMMMAppliedForcesUnitTest 19/89 Test #19: QMMMAppliedForcesUnitTest ................. Passed 0.05 sec Start 20: ColvarsAppliedForcesUnitTest 20/89 Test #20: ColvarsAppliedForcesUnitTest .............. Passed 0.07 sec Start 21: AppliedForcesUnitTest 21/89 Test #21: AppliedForcesUnitTest ..................... Passed 0.02 sec Start 22: ListedForcesTest 22/89 Test #22: ListedForcesTest .......................... Passed 0.04 sec Start 23: NbnxmTests 23/89 Test #23: NbnxmTests ................................ Passed 0.20 sec Start 24: CommandLineUnitTests 24/89 Test #24: CommandLineUnitTests ...................... Passed 0.03 sec Start 25: DomDecTests 25/89 Test #25: DomDecTests ............................... Passed 0.02 sec Start 26: DomDecMpiTests 26/89 Test #26: DomDecMpiTests ............................ Passed 0.02 sec Start 27: EwaldUnitTests 27/89 Test #27: EwaldUnitTests ............................ Passed 0.25 sec Start 28: FFTUnitTests 28/89 Test #28: FFTUnitTests .............................. Passed 0.10 sec Start 29: GpuUtilsUnitTests 29/89 Test #29: GpuUtilsUnitTests ......................... Passed 0.02 sec Start 30: HardwareUnitTests 30/89 Test #30: HardwareUnitTests ......................... Passed 0.04 sec Start 31: MathUnitTests 31/89 Test #31: MathUnitTests ............................. Passed 0.08 sec Start 32: MdrunUtilityUnitTests 32/89 Test #32: MdrunUtilityUnitTests ..................... Passed 0.02 sec Start 33: MdrunUtilityMpiUnitTests 33/89 Test #33: MdrunUtilityMpiUnitTests .................. Passed 0.03 sec Start 34: MDSpanTests 34/89 Test #34: MDSpanTests ............................... Passed 0.02 sec Start 35: MdtypesUnitTest 35/89 Test #35: MdtypesUnitTest ........................... Passed 0.03 sec Start 36: OnlineHelpUnitTests 36/89 Test #36: OnlineHelpUnitTests ....................... Passed 0.02 sec Start 37: OptionsUnitTests 37/89 Test #37: OptionsUnitTests .......................... Passed 0.02 sec Start 38: PbcutilUnitTest 38/89 Test #38: PbcutilUnitTest ........................... Passed 0.02 sec Start 39: RandomUnitTests 39/89 Test #39: RandomUnitTests ........................... Passed 0.02 sec Start 40: RestraintTests 40/89 Test #40: RestraintTests ............................ Passed 0.02 sec Start 41: TableUnitTests 41/89 Test #41: TableUnitTests ............................ Passed 0.24 sec Start 42: TaskAssignmentUnitTests 42/89 Test #42: TaskAssignmentUnitTests ................... Passed 0.02 sec Start 43: GmxTimingTests 43/89 Test #43: GmxTimingTests ............................ Passed 0.02 sec Start 44: TopologyTest 44/89 Test #44: TopologyTest .............................. Passed 0.04 sec Start 45: PullTest 45/89 Test #45: PullTest .................................. Passed 0.02 sec Start 46: SimdUnitTests 46/89 Test #46: SimdUnitTests ............................. Passed 0.06 sec Start 47: CompatibilityHelpersTests 47/89 Test #47: CompatibilityHelpersTests ................. Passed 0.02 sec Start 48: GmxAnaTest 48/89 Test #48: GmxAnaTest ................................ Passed 0.92 sec Start 49: GmxPreprocessTests 49/89 Test #49: GmxPreprocessTests ........................ Passed 0.96 sec Start 50: Pdb2gmx1Test 50/89 Test #50: Pdb2gmx1Test .............................. Passed 0.91 sec Start 51: Pdb2gmx2Test 51/89 Test #51: Pdb2gmx2Test .............................. Passed 1.17 sec Start 52: Pdb2gmx3Test 52/89 Test #52: Pdb2gmx3Test .............................. Passed 1.72 sec Start 53: CorrelationsTest 53/89 Test #53: CorrelationsTest .......................... Passed 0.64 sec Start 54: AnalysisDataUnitTests 54/89 Test #54: AnalysisDataUnitTests ..................... Passed 0.04 sec Start 55: CoordinateIOTests 55/89 Test #55: CoordinateIOTests ......................... Passed 0.07 sec Start 56: TrajectoryAnalysisUnitTests 56/89 Test #56: TrajectoryAnalysisUnitTests ............... Passed 6.62 sec Start 57: EnergyAnalysisUnitTests 57/89 Test #57: EnergyAnalysisUnitTests ................... Passed 0.14 sec Start 58: ToolUnitTests 58/89 Test #58: ToolUnitTests ............................. Passed 2.26 sec Start 59: FileIOTests 59/89 Test #59: FileIOTests ............................... Passed 0.04 sec Start 60: SelectionUnitTests 60/89 Test #60: SelectionUnitTests ........................ Passed 0.15 sec Start 61: MdrunOutputTests 61/89 Test #61: MdrunOutputTests .......................... Passed 0.15 sec Start 62: MdrunModulesTests 62/89 Test #62: MdrunModulesTests ......................... Passed 0.28 sec Start 63: MdrunIOTests 63/89 Test #63: MdrunIOTests .............................. Passed 2.40 sec Start 64: MdrunTestsOneRank 64/89 Test #64: MdrunTestsOneRank ......................... Passed 2.21 sec Start 65: MdrunTestsTwoRanks 65/89 Test #65: MdrunTestsTwoRanks ........................ Passed 2.13 sec Start 66: MdrunSingleRankAlgorithmsTests 66/89 Test #66: MdrunSingleRankAlgorithmsTests ............ Passed 1.46 sec Start 67: Minimize1RankTests 67/89 Test #67: Minimize1RankTests ........................ Passed 1.19 sec Start 68: Minimize2RankTests 68/89 Test #68: Minimize2RankTests ........................ Passed 1.19 sec Start 69: MdrunNonIntegratorTests 69/89 Test #69: MdrunNonIntegratorTests ................... Passed 4.47 sec Start 70: MdrunTpiTests 70/89 Test #70: MdrunTpiTests ............................. Passed 0.80 sec Start 71: MdrunMpiTests 71/89 Test #71: MdrunMpiTests ............................. Passed 0.42 sec Start 72: MdrunMultiSimTests 72/89 Test #72: MdrunMultiSimTests ........................ Passed 0.02 sec Start 73: MdrunMultiSimReplexTests 73/89 Test #73: MdrunMultiSimReplexTests .................. Passed 0.02 sec Start 74: MdrunMultiSimReplexEquivalenceTests 74/89 Test #74: MdrunMultiSimReplexEquivalenceTests ....... Passed 0.02 sec Start 75: MdrunMpi1RankPmeTests 75/89 Test #75: MdrunMpi1RankPmeTests ..................... Passed 0.79 sec Start 76: MdrunMpi2RankPmeTests 76/89 Test #76: MdrunMpi2RankPmeTests ..................... Passed 1.25 sec Start 77: MdrunCoordinationBasicTests1Rank 77/89 Test #77: MdrunCoordinationBasicTests1Rank .......... Passed 0.07 sec Start 78: MdrunCoordinationBasicTests2Ranks 78/89 Test #78: MdrunCoordinationBasicTests2Ranks ......... Passed 0.07 sec Start 79: MdrunCoordinationCouplingTests1Rank 79/89 Test #79: MdrunCoordinationCouplingTests1Rank ....... Passed 1.24 sec Start 80: MdrunCoordinationCouplingTests2Ranks 80/89 Test #80: MdrunCoordinationCouplingTests2Ranks ...... Passed 1.39 sec Start 81: MdrunCoordinationConstraintsTests1Rank 81/89 Test #81: MdrunCoordinationConstraintsTests1Rank .... Passed 28.98 sec Start 82: MdrunCoordinationConstraintsTests2Ranks 82/89 Test #82: MdrunCoordinationConstraintsTests2Ranks ... Passed 29.88 sec Start 83: MdrunFEPTests 83/89 Test #83: MdrunFEPTests ............................. Passed 2.44 sec Start 84: MdrunPullTests 84/89 Test #84: MdrunPullTests ............................ Passed 1.69 sec Start 85: MdrunRotationTests 85/89 Test #85: MdrunRotationTests ........................ Passed 0.16 sec Start 86: MdrunSimulatorComparison 86/89 Test #86: MdrunSimulatorComparison .................. Passed 11.71 sec Start 87: MdrunVirtualSiteTests 87/89 Test #87: MdrunVirtualSiteTests ..................... Passed 0.39 sec Start 88: regressiontests/complex 88/89 Test #88: regressiontests/complex ................... Passed 40.17 sec Start 89: regressiontests/essentialdynamics 89/89 Test #89: regressiontests/essentialdynamics ......... Passed 2.90 sec 100% tests passed, 0 tests failed out of 89 Label Time Summary: GTest = 196.89 sec*proc (85 tests) IntegrationTest = 86.97 sec*proc (28 tests) MpiTest = 122.60 sec*proc (21 tests) QuickGpuTest = 22.28 sec*proc (20 tests) SlowGpuTest = 200.39 sec*proc (16 tests) SlowTest = 106.72 sec*proc (13 tests) UnitTest = 3.20 sec*proc (44 tests) Total Test time (real) = 160.93 sec gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [100%] Built target run-ctest-nophys /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/CMakeFiles/check.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' [100%] Built target check gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build/CMakeFiles 0 gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/serial_d/redhat-linux-build' + [[ '' = openmpi ]] + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd mpich_d + [[ mpich = openmpi ]] + /usr/bin/cmake --build redhat-linux-build -j48 --verbose --target check Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 check /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 check gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/CMakeFiles 95 /usr/bin/gmake -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/external/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build 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Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/build Dependencies file "src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target mdrun_objlib Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target energyanalysis Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target thread_mpi /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target scanner Consolidate compiler generated dependencies of target linearalgebra Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 0%] Generating release version information Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.13 -D PROJECT_VERSION=2024.3-Fedora42 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora42 -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". [ 0%] Building CXX object src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/external/googletest/googletest && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/src/gtest-all.cc Consolidate compiler generated dependencies of target options [ 0%] Built target mdrun_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build [ 0%] Built target energyanalysis [ 0%] Built target thread_mpi gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/options/CMakeFiles/options.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 0%] Built target scanner [ 0%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" [ 0%] Built target options [ 0%] Built target release-version-info Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target pulling gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/pulling/CMakeFiles/pulling.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Consolidate compiler generated dependencies of target colvars_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build [ 1%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/colvars_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". [ 3%] Built target colvars_objlib Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target taskassignment gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 3%] Built target taskassignment Consolidate compiler generated dependencies of target modularsimulator gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 5%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target libgromacs gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 62%] Built target libgromacs [ 62%] Linking CXX static library ../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgtest.a "CMakeFiles/gtest.dir/src/gtest-all.cc.o" /usr/bin/ranlib ../../../../lib/libgtest.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 62%] Built target gtest /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend /usr/bin/gmake -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/build.make src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdtypes/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build.make src/gromacs/timing/tests/CMakeFiles/timing-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend /usr/bin/gmake -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/timing/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/timing/tests/CMakeFiles/timing-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests 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src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/build.make src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/build /usr/bin/gmake -f src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build.make src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/build.make src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests 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gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/correlationfunctions/tests 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"Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make 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src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/energycomparison.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/moduletest.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulatorcomparison.cpp [ 66%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 66%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o [ 66%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 66%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -MF CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o.d -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarspreprocessor.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfitting.cpp [ 66%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 66%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o -MF CMakeFiles/listed_forces-test.dir/bonded.cpp.o.d -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/bonded.cpp /usr/bin/gmake -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o -MF CMakeFiles/awh-test.dir/awh_setup.cpp.o.d -o CMakeFiles/awh-test.dir/awh_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/awh_setup.cpp [ 66%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o [ 66%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmminputgenerator.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxlib/nonbonded/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/nonbonded/tests/nb_free_energy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -MF CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o.d -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/mpitest.cpp /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build [ 66%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 66%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -MF CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o.d -o CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/haloexchange_mpi.cpp [ 66%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o [ 66%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/clfftinitializer.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -MF CMakeFiles/applied_forces-test.dir/electricfield.cpp.o.d -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/tests/electricfield.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -MF CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o.d -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/calc_verletbuf.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o -MF CMakeFiles/domdec-test.dir/hashedmap.cpp.o.d -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/hashedmap.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/enerdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/enerdata.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/mock_helptopic.cpp /usr/bin/gmake -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o -MF CMakeFiles/utility-test.dir/alignedallocator.cpp.o.d -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/alignedallocator.cpp [ 66%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build [ 66%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Entering 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -MF CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o.d -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/abstractoptionstorage.cpp [ 66%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -MF CMakeFiles/nbnxm-test.dir/exclusions.cpp.o.d -o CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/exclusions.cpp [ 66%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -MF CMakeFiles/hardware-test.dir/cpuinfo.cpp.o.d -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/cpuinfo.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fft/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o -MF CMakeFiles/fft-test.dir/fft.cpp.o.d -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests/fft.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o -MF CMakeFiles/pbcutil-test.dir/com.cpp.o.d -o CMakeFiles/pbcutil-test.dir/com.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/com.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 67%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o -MF CMakeFiles/table-test.dir/splinetable.cpp.o.d -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/tests/splinetable.cpp [ 67%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o [ 67%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 67%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o [ 67%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o [ 67%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o -MF CMakeFiles/topology-test.dir/atoms.cpp.o.d -o CMakeFiles/topology-test.dir/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/atoms.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o -MF CMakeFiles/timing-test.dir/timing.cpp.o.d -o CMakeFiles/timing-test.dir/timing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/tests/timing.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o -MF CMakeFiles/restraintpotential-test.dir/manager.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/tests/manager.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -MF CMakeFiles/random-test.dir/exponentialdistribution.cpp.o.d -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/exponentialdistribution.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -MF CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o.d -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/accessor_policy.cpp [ 67%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o -MF CMakeFiles/pull-test.dir/pull.cpp.o.d -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/tests/pull.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o -MF CMakeFiles/compat-test.dir/mp11.cpp.o.d -o CMakeFiles/compat-test.dir/mp11.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/tests/mp11.cpp [ 67%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o [ 67%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o [ 67%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/tests/usergpuids.cpp [ 67%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o -MF CMakeFiles/simd-test.dir/base.cpp.o.d -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/base.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/editconf.cpp [ 67%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o [ 67%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 67%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o [ 67%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 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-MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o -MF CMakeFiles/correlations-test.dir/autocorr.cpp.o.d -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 67%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_availability.cpp [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 67%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/mdspan-test.dir/extents.cpp.o.d -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/extents.cpp [ 67%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o -MF CMakeFiles/compat-test.dir/pointers.cpp.o.d -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/tests/pointers.cpp [ 68%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -MF CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o.d -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 70%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmtopologypreprocessor.cpp [ 70%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o -MF CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o.d -o CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/observablesreducer.cpp /usr/bin/gmake -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o -MF CMakeFiles/random-test.dir/gammadistribution.cpp.o.d -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/gammadistribution.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -MF CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o.d -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -MF CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o.d -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp [ 71%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o -MF CMakeFiles/awh-test.dir/bias.cpp.o.d -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/bias.cpp [ 71%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_stream_manager.cpp [ 71%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 72%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 [ 72%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvars.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o" "CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 72%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 72%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o -MF CMakeFiles/correlations-test.dir/expfit.cpp.o.d -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/expfit.cpp [ 72%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 72%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/restraintpotential-test.dir/manager.cpp.o" "CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/restraintpotential-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 72%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingamplitudelookup.cpp [ 72%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o cd 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectorycomparison.cpp [ 73%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o -MF CMakeFiles/mdlib-test.dir/constr.cpp.o.d -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constr.cpp [ 73%] Linking CXX executable ../../../../bin/timing-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/timing-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/timing-test.dir/timing.cpp.o" "CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/timing-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 73%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o -MF CMakeFiles/listed_forces-test.dir/pairs.cpp.o.d -o CMakeFiles/listed_forces-test.dir/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/pairs.cpp [ 73%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o -MF CMakeFiles/mdspan-test.dir/extensions.cpp.o.d -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/extensions.cpp [ 73%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o -MF CMakeFiles/pbcutil-test.dir/mshift.cpp.o.d -o CMakeFiles/pbcutil-test.dir/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/mshift.cpp [ 73%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o" "CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_mpich_d.a ../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../lib/libtestutils.a ../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../lib/libgmock.a ../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 73%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o -MF CMakeFiles/simd-test.dir/scalar.cpp.o.d -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar.cpp [ 73%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o -MF CMakeFiles/math-test.dir/boxmatrix.cpp.o.d -o CMakeFiles/math-test.dir/boxmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/boxmatrix.cpp [ 73%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_mindist.cpp [ 73%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/applied_forces-test.dir/electricfield.cpp.o" "CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 74%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 74%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 74%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genion.cpp [ 74%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 [ 74%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/pull-test.dir/pull.cpp.o" "CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/pulling.dir/output.cpp.o ../CMakeFiles/pulling.dir/pull.cpp.o ../CMakeFiles/pulling.dir/pull_rotation.cpp.o ../CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o ../CMakeFiles/pulling.dir/pullutil.cpp.o ../CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -lmuparser /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a "CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o" "CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" [ 74%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a [ 74%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernel_test.cpp [ 74%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o -MF CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o.d -o CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/mockhardwaretopology.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 74%] Built target onlinehelp-test-shared [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -MF CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o.d -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/xvgtest_tests.cpp [ 74%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o -MF CMakeFiles/random-test.dir/normaldistribution.cpp.o.d -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/normaldistribution.cpp [ 74%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/compat-test.dir/mp11.cpp.o" "CMakeFiles/compat-test.dir/pointers.cpp.o" "CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/compat-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 74%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -MF CMakeFiles/ewald-test.dir/pmegathertest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmegathertest.cpp [ 75%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a "CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o" "CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 75%] Built target mdrunutility-test-shared [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesolvetest.cpp [ 75%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmoptions.cpp [ 75%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingforceprovider.cpp [ 75%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarsoptions.cpp [ 75%] Building CXX object src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxlib/nonbonded/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o -MF CMakeFiles/utility-test.dir/arrayref.cpp.o.d -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/arrayref.cpp [ 75%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o" "CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o ../CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o ../CMakeFiles/taskassignment.dir/findallgputasks.cpp.o ../CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o ../CMakeFiles/taskassignment.dir/resourcedivision.cpp.o ../CMakeFiles/taskassignment.dir/taskassignment.cpp.o ../CMakeFiles/taskassignment.dir/usergpuids.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 75%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o -MF CMakeFiles/mdspan-test.dir/layouts.cpp.o.d -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/layouts.cpp [ 75%] Linking CXX executable ../../../../bin/domdec-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-mpi-test.dir/link.txt --verbose=1 [ 75%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o" "CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_traj.cpp [ 75%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/domdec-test.dir/hashedmap.cpp.o" "CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o" "CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 75%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx2-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 75%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/fft-test.dir/fft.cpp.o" "CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fft-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 75%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -MF CMakeFiles/math-test.dir/coordinatetransformation.cpp.o.d -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/coordinatetransformation.cpp [ 75%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -MF CMakeFiles/topology-test.dir/exclusionblocks.cpp.o.d -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/exclusionblocks.cpp [ 76%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o [ 76%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genrestr.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 76%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 76%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestdata.cpp [ 76%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" 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CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 77%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 78%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o -MF CMakeFiles/simd-test.dir/scalar_util.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar_util.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -MF CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o.d -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -MF CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o.d -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 80%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects 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../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 80%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingoptions.cpp [ 80%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o -MF CMakeFiles/mdspan-test.dir/mdspan.cpp.o.d -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/mdspan.cpp [ 80%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gen_maxwell_velocities.cpp [ 80%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx3-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 80%] Linking CXX static library ../../../../lib/libmdrun_test_infrastructure.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o /usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 80%] Built target mdrun_test_infrastructure [ 81%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o -MF CMakeFiles/hardware-test.dir/device_management.cpp.o.d -o CMakeFiles/hardware-test.dir/device_management.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/device_management.cpp [ 81%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/correlations-test.dir/autocorr.cpp.o" "CMakeFiles/correlations-test.dir/correlationdataset.cpp.o" "CMakeFiles/correlations-test.dir/expfit.cpp.o" "CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o" "CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/correlations-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 81%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 [ 81%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/gmxana-test.dir/entropy.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o" "CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxana-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o -MF CMakeFiles/options-test.dir/filenameoption.cpp.o.d -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/filenameoption.cpp [ 82%] Linking CXX executable ../../../../../bin/nonbonded-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nonbonded-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o" "CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/nonbonded-fep-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich_d.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgmock.a ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 82%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 [ 82%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o -MF CMakeFiles/awh-test.dir/biasgrid.cpp.o.d -o CMakeFiles/awh-test.dir/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biasgrid.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/testutils-test.dir/interactivetest.cpp.o" "CMakeFiles/testutils-test.dir/refdata_tests.cpp.o" "CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o" "CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o" "CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_mpich_d.a ../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../lib/libtestutils.a ../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../lib/libgmock.a ../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 82%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/table-test.dir/splinetable.cpp.o" "CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/table-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/pbcenums.cpp [ 82%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/filenameoptionmanager.cpp [ 82%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o -MF CMakeFiles/options-test.dir/option.cpp.o.d -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/option.cpp [ 82%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o -MF CMakeFiles/topology-test.dir/idef.cpp.o.d -o CMakeFiles/topology-test.dir/idef.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/idef.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o -MF CMakeFiles/simd-test.dir/scalar_math.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar_math.cpp [ 82%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -DGMX_CP2K=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmforceprovider.cpp [ 82%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -MF CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o.d -o CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/position_restraints.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/threefry.cpp [ 84%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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84%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/pbcutil-test.dir/com.cpp.o" "CMakeFiles/pbcutil-test.dir/mshift.cpp.o" "CMakeFiles/pbcutil-test.dir/pbc.cpp.o" "CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o" "CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pbcutil-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmm.cpp [ 85%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o -MF CMakeFiles/mdlib-test.dir/ebin.cpp.o.d -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/ebin.cpp [ 85%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 85%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/hardware-test.dir/cpuinfo.cpp.o" "CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/device_management.cpp.o" "CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/hardware-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -MF CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o.d -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.cpp [ 85%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o -MF CMakeFiles/topology-test.dir/index.cpp.o.d -o CMakeFiles/topology-test.dir/index.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/index.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o -MF CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o.d -o CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/energydrifttracker.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 85%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o [ 85%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o" "CMakeFiles/mdspan-test.dir/extents.cpp.o" "CMakeFiles/mdspan-test.dir/extensions.cpp.o" "CMakeFiles/mdspan-test.dir/layouts.cpp.o" "CMakeFiles/mdspan-test.dir/mdspan.cpp.o" "CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdspan-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a "CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 85%] Built target analysisdata-test-shared [ 85%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o -MF CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o.d -o CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/forcebuffers.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd.cpp [ 85%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -MF CMakeFiles/mdlib-test.dir/energyoutput.cpp.o.d -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/energyoutput.cpp [ 85%] Linking CXX executable ../../../../../bin/density_fitting_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/density_fitting_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/density_fitting_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich_d.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -MF CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 85%] Linking CXX executable ../../../../../bin/colvars_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/colvars_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/colvars_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich_d.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o -MF CMakeFiles/options-test.dir/optionsassigner.cpp.o.d -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/optionsassigner.cpp [ 85%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_buffer.cpp [ 85%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/gpueventsynchronizer.cpp [ 85%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o -MF CMakeFiles/topology-test.dir/mtop.cpp.o.d -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/mtop.cpp [ 85%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o -MF CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/typecasts.cpp [ 85%] Linking CXX executable ../../../../bin/nbnxm-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nbnxm-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/nbnxm-test.dir/exclusions.cpp.o" "CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o" "CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o" "CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/nbnxm-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/listed_forces-test.dir/bonded.cpp.o" "CMakeFiles/listed_forces-test.dir/pairs.cpp.o" "CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o" "CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/listed_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -MF CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o.d -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/uniformintdistribution.cpp /usr/bin/gmake -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 85%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/tests/energyterm.cpp [ 85%] Linking CXX executable ../../../../../bin/qmmm_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/qmmm_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/qmmm_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich_d.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o -MF CMakeFiles/coordinateio-test.dir/register.cpp.o.d -o CMakeFiles/coordinateio-test.dir/register.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/register.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/grompp_directives.cpp [ 86%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o -MF CMakeFiles/topology-test.dir/symtab.cpp.o.d -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/symtab.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o -MF CMakeFiles/options-test.dir/repeatingsection.cpp.o.d -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/repeatingsection.cpp [ 86%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o" "CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o" "CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o" "CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o" "CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o" "CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o" "CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gpu_utils-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o -MF CMakeFiles/math-test.dir/functions.cpp.o.d -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/functions.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 86%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 86%] Built target testutils-mpi-test [ 86%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o -MF CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o.d -o CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/multipletimestepping.cpp [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/booltype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/utility-test.dir/booltype.cpp.o.d -o CMakeFiles/utility-test.dir/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/booltype.cpp [ 86%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o -MF CMakeFiles/ewald-test.dir/pme.cpp.o.d -o CMakeFiles/ewald-test.dir/pme.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pme.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -MF CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o.d -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/uniformrealdistribution.cpp [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o -MF CMakeFiles/coordinateio-test.dir/requirements.cpp.o.d -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/requirements.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 86%] Built target utility-mpi-test [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o -MF CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o.d -o CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/freeenergyparameters.cpp [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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CMakeFiles/math-test.dir/gausstransform.cpp.o.d -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/gausstransform.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/densityfittingforce.cpp [ 86%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/massrepartitioning.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o -MF CMakeFiles/simd-test.dir/simd_integer.cpp.o.d -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_integer.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o" "CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o" "CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/energyanalysis-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 87%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o -MF CMakeFiles/topology-test.dir/topsort.cpp.o.d -o CMakeFiles/topology-test.dir/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/topsort.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 87%] Built target timing-test [ 87%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -MF CMakeFiles/coordinateio-test.dir/setatoms.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setatoms.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o -MF CMakeFiles/utility-test.dir/bitmask32.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask32.cpp [ 87%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -MF CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setbothtime.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 87%] Built target restraintpotential-test [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o -MF CMakeFiles/utility-test.dir/bitmask64.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask64.cpp [ 87%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o" "CMakeFiles/ewald-test.dir/pmegathertest.cpp.o" "CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o" "CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o" "CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o" "CMakeFiles/ewald-test.dir/pme.cpp.o" "CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/ewald-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 87%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/random-test.dir/exponentialdistribution.cpp.o" "CMakeFiles/random-test.dir/gammadistribution.cpp.o" "CMakeFiles/random-test.dir/normaldistribution.cpp.o" "CMakeFiles/random-test.dir/seed.cpp.o" "CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o" "CMakeFiles/random-test.dir/threefry.cpp.o" "CMakeFiles/random-test.dir/uniformintdistribution.cpp.o" "CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o" "CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/random-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 87%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o -MF CMakeFiles/simd-test.dir/simd_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp [ 87%] Linking CXX executable ../../../../bin/mdtypes-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdtypes-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdtypes-test.dir/enerdata.cpp.o" "CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o" "CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o" "CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o" "CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o" "CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdtypes-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 87%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -MF CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setstarttime.cpp [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 87%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -MF CMakeFiles/coordinateio-test.dir/settimestep.cpp.o.d -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/settimestep.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o [ 87%] Built target domdec-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -MF CMakeFiles/coordinateio-test.dir/testmodule.cpp.o.d -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/testmodule.cpp [ 87%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o -MF CMakeFiles/awh-test.dir/friction_metric.cpp.o.d -o CMakeFiles/awh-test.dir/friction_metric.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/friction_metric.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-MT src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o -MF CMakeFiles/math-test.dir/invertmatrix.cpp.o.d -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/invertmatrix.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o -MF CMakeFiles/utility-test.dir/cstringutil.cpp.o.d -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/cstringutil.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 87%] Built target 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../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/coordinateio-test.dir/builder.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o" "CMakeFiles/coordinateio-test.dir/register.cpp.o" "CMakeFiles/coordinateio-test.dir/requirements.cpp.o" "CMakeFiles/coordinateio-test.dir/setatoms.cpp.o" "CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o" "CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o" "CMakeFiles/coordinateio-test.dir/settimestep.cpp.o" "CMakeFiles/coordinateio-test.dir/testmodule.cpp.o" "CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/coordinateio-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 87%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/tool-test.dir/make_ndx.cpp.o.d -o CMakeFiles/tool-test.dir/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/make_ndx.cpp [ 87%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -MF CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o.d -o CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/parrinellorahman.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o -MF CMakeFiles/math-test.dir/matrix.cpp.o.d -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/matrix.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/multidimarray.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o -MF CMakeFiles/math-test.dir/neldermead.cpp.o.d -o CMakeFiles/math-test.dir/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/neldermead.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/treesupport.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o -MF CMakeFiles/math-test.dir/optimization.cpp.o.d -o CMakeFiles/math-test.dir/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/optimization.cpp [ 87%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o -MF CMakeFiles/math-test.dir/paddedvector.cpp.o.d -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/paddedvector.cpp [ 87%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/topology-test.dir/atoms.cpp.o" "CMakeFiles/topology-test.dir/exclusionblocks.cpp.o" "CMakeFiles/topology-test.dir/idef.cpp.o" "CMakeFiles/topology-test.dir/index.cpp.o" "CMakeFiles/topology-test.dir/mtop.cpp.o" "CMakeFiles/topology-test.dir/symtab.cpp.o" "CMakeFiles/topology-test.dir/topsort.cpp.o" "CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/topology-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 87%] Built target pull-test [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o -MF CMakeFiles/mdlib-test.dir/settle.cpp.o.d -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settle.cpp [ 87%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o -MF CMakeFiles/tool-test.dir/report_methods.cpp.o.d -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/report_methods.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/topdirs.cpp In file included from /usr/include/c++/14/istream:41, from /usr/include/c++/14/sstream:40, from /usr/include/c++/14/bits/quoted_string.h:38, from /usr/include/c++/14/iomanip:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest.h:54, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include/testutils/testasserts.h:64, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:53: In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘testing::Message::operator<< (double const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (double const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:397:86: /usr/include/c++/14/ostream:229:25: warning: ‘maxUlpDiffPos’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:281:23: note: ‘maxUlpDiffPos’ was declared here 281 | real maxUlpDiffPos; | ^~~~~~~~~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘testing::Message::operator<< (double const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (double const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:399:63: /usr/include/c++/14/ostream:229:25: warning: ‘refValMaxUlpDiff’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:282:23: note: ‘refValMaxUlpDiff’ was declared here 282 | real refValMaxUlpDiff, simdValMaxUlpDiff; | ^~~~~~~~~~~~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘testing::Message::operator<< (double const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (double const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:400:63: /usr/include/c++/14/ostream:229:25: warning: ‘simdValMaxUlpDiff’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:282:41: note: ‘simdValMaxUlpDiff’ was declared here 282 | real refValMaxUlpDiff, simdValMaxUlpDiff; | ^~~~~~~~~~~~~~~~~ [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -MF CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o.d -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/defaultinitializationallocator.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 87%] Built target testutils-test [ 87%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o -MF CMakeFiles/tool-test.dir/trjconv.cpp.o.d -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/trjconv.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o -MF CMakeFiles/fileio-test.dir/checkpoint.cpp.o.d -o CMakeFiles/fileio-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/checkpoint.cpp [ 88%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -MF CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o.d -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/enumerationhelpers.cpp [ 88%] Linking CXX executable ../../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/awh-test.dir/awh_setup.cpp.o" "CMakeFiles/awh-test.dir/bias.cpp.o" "CMakeFiles/awh-test.dir/biasgrid.cpp.o" "CMakeFiles/awh-test.dir/biassharing.cpp.o" "CMakeFiles/awh-test.dir/biasstate.cpp.o" "CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o" "CMakeFiles/awh-test.dir/friction_metric.cpp.o" "CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/awh-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich_d.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 88%] Built target table-test [ 88%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestrunners.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 88%] Built target domdec-mpi-test [ 88%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o -MF CMakeFiles/math-test.dir/vectypes.cpp.o.d -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/vectypes.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 88%] Built target fft-test [ 88%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o -MF CMakeFiles/tool-test.dir/convert-tpr.cpp.o.d -o CMakeFiles/tool-test.dir/convert-tpr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/convert-tpr.cpp [ 88%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o -MF CMakeFiles/simd-test.dir/simd_memory.cpp.o.d -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_memory.cpp [ 88%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 88%] Built target mdspan-test [ 88%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -MF CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o.d -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/fixedcapacityvector.cpp /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 88%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o -MF CMakeFiles/selection-test.dir/indexutil.cpp.o.d -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/indexutil.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o -MF CMakeFiles/fileio-test.dir/confio.cpp.o.d -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/confio.cpp [ 88%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_vector_operations.cpp [ 88%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o -MF CMakeFiles/mdlib-test.dir/shake.cpp.o.d -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/shake.cpp [ 88%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -MF CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o.d -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/simulationsignal.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 88%] Built target taskassignment-test [ 88%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o -MF CMakeFiles/simd-test.dir/simd4.cpp.o.d -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4.cpp [ 88%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o" "CMakeFiles/options-test.dir/filenameoption.cpp.o" "CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o" "CMakeFiles/options-test.dir/option.cpp.o" "CMakeFiles/options-test.dir/optionsassigner.cpp.o" "CMakeFiles/options-test.dir/repeatingsection.cpp.o" "CMakeFiles/options-test.dir/timeunitmanager.cpp.o" "CMakeFiles/options-test.dir/treesupport.cpp.o" "CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/options-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 88%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -MF CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o.d -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/inmemoryserializer.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o -MF CMakeFiles/fileio-test.dir/filemd5.cpp.o.d -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/filemd5.cpp [ 88%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/keyvaluetreeserializer.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/helpwriting.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o -MF CMakeFiles/fileio-test.dir/filetypes.cpp.o.d -o CMakeFiles/fileio-test.dir/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/filetypes.cpp [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o -MF CMakeFiles/mdlib-test.dir/updategroups.cpp.o.d -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/updategroups.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 89%] Built target pbcutil-test [ 89%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o -MF CMakeFiles/selection-test.dir/nbsearch.cpp.o.d -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/nbsearch.cpp [ 89%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o -MF CMakeFiles/selection-test.dir/poscalc.cpp.o.d -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/poscalc.cpp [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_floatingpoint.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 89%] Built target correlations-test [ 89%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o -MF CMakeFiles/selection-test.dir/selectioncollection.cpp.o.d -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/selectioncollection.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 89%] Built target hardware-test [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -MF CMakeFiles/fileio-test.dir/mrcserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/mrcserializer.cpp [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -MF CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/outputfiles.cpp [ 89%] Linking CXX executable ../../../../bin/tool-test cd 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -MF CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o.d -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/updategroupscog.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/listoflists.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/listoflists.cpp.o -MF CMakeFiles/utility-test.dir/listoflists.cpp.o.d -o CMakeFiles/utility-test.dir/listoflists.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/listoflists.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -MF CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o cd 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-MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners_gpu.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o -MF CMakeFiles/fileio-test.dir/readinp.cpp.o.d -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/readinp.cpp [ 89%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o -MF CMakeFiles/selection-test.dir/selectionoption.cpp.o.d -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/selectionoption.cpp [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestrunners_gpu.cpp [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectory_writing.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 89%] Built target random-test [ 89%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o -MF CMakeFiles/selection-test.dir/toputils.cpp.o.d -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/toputils.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/timecontrol.cpp [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o -MF CMakeFiles/utility-test.dir/logger.cpp.o.d -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/logger.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && 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/usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/mdgpugraph.cpp [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o -MF CMakeFiles/utility-test.dir/message_string_collector.cpp.o.d -o CMakeFiles/utility-test.dir/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/message_string_collector.cpp [ 90%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/simd-test.dir/base.cpp.o" "CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o" "CMakeFiles/simd-test.dir/scalar.cpp.o" "CMakeFiles/simd-test.dir/scalar_util.cpp.o" "CMakeFiles/simd-test.dir/scalar_math.cpp.o" "CMakeFiles/simd-test.dir/simd.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o" "CMakeFiles/simd-test.dir/simd_integer.cpp.o" "CMakeFiles/simd-test.dir/simd_math.cpp.o" "CMakeFiles/simd-test.dir/simd_memory.cpp.o" "CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/simd4.cpp.o" "CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd4_math.cpp.o" "CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/simd-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/interactiveMD.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -MF CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/checkpoint.cpp [ 90%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 90%] Built target gpu_utils-test [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -MF CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestrunners_gpu.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/mimic.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/exactcontinuation.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o -MF CMakeFiles/fileio-test.dir/tngio.cpp.o.d -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/tngio.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -MF CMakeFiles/mdrun-test.dir/swapcoords.cpp.o.d -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/swapcoords.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -MF CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o.d -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp [ 90%] Linking CXX executable ../../../../bin/mdrun-output-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o" "CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o" "CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o" "CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o" "CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/freezegroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -MF CMakeFiles/mdrun-test.dir/freezegroups.cpp.o.d -o CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/freezegroups.cpp [ 90%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/wholemoleculetransform.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/dispersion_correction.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 90%] Built target density_fitting_applied_forces-test [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o -MF CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o.d -o CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/constantacceleration.cpp /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -MF CMakeFiles/mdrun-io-test.dir/grompp.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/grompp.cpp [ 92%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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/usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o -MF CMakeFiles/fileio-test.dir/xvgio.cpp.o.d -o CMakeFiles/fileio-test.dir/xvgio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/xvgio.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 92%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -MF CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o.d -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/physicalnodecommunicator.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests 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-MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/ewaldsurfaceterm.cpp [ 93%] Linking CXX executable ../../../../bin/mdrun-modules-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o" "CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o" "CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -MF CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/initialconstraints.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/boxdeformation.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/nonbonded_bench.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o -MF CMakeFiles/utility-test.dir/range.cpp.o.d -o CMakeFiles/utility-test.dir/range.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/range.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/orires.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o" "CMakeFiles/mdlib-test.dir/calcvir.cpp.o" "CMakeFiles/mdlib-test.dir/constr.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/ebin.cpp.o" "CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o" "CMakeFiles/mdlib-test.dir/energyoutput.cpp.o" "CMakeFiles/mdlib-test.dir/expanded.cpp.o" "CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrog.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o" "CMakeFiles/mdlib-test.dir/settle.cpp.o" 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/usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/normalmodes.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o -MF CMakeFiles/utility-test.dir/strconvert.cpp.o.d -o CMakeFiles/utility-test.dir/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/strconvert.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -MF CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o.d -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/tpitest.cpp [ 94%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o" "CMakeFiles/math-test.dir/boxmatrix.cpp.o" "CMakeFiles/math-test.dir/coordinatetransformation.cpp.o" "CMakeFiles/math-test.dir/densityfit.cpp.o" "CMakeFiles/math-test.dir/dofit.cpp.o" "CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o" "CMakeFiles/math-test.dir/functions.cpp.o" "CMakeFiles/math-test.dir/gausstransform.cpp.o" "CMakeFiles/math-test.dir/densityfittingforce.cpp.o" "CMakeFiles/math-test.dir/invertmatrix.cpp.o" "CMakeFiles/math-test.dir/matrix.cpp.o" "CMakeFiles/math-test.dir/multidimarray.cpp.o" "CMakeFiles/math-test.dir/neldermead.cpp.o" "CMakeFiles/math-test.dir/optimization.cpp.o" "CMakeFiles/math-test.dir/paddedvector.cpp.o" "CMakeFiles/math-test.dir/vectypes.cpp.o" "CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/math-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -MF CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o.d -o CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/stringtoenumvalueconverter.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/domain_decomposition.cpp [ 94%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 94%] Built target listed_forces-test [ 94%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/fileio-test.dir/checkpoint.cpp.o" "CMakeFiles/fileio-test.dir/confio.cpp.o" "CMakeFiles/fileio-test.dir/filemd5.cpp.o" "CMakeFiles/fileio-test.dir/filetypes.cpp.o" "CMakeFiles/fileio-test.dir/mrcserializer.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o" "CMakeFiles/fileio-test.dir/readinp.cpp.o" "CMakeFiles/fileio-test.dir/timecontrol.cpp.o" "CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o" "CMakeFiles/fileio-test.dir/tngio.cpp.o" "CMakeFiles/fileio-test.dir/xvgio.cpp.o" "CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fileio-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/mimic.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/termination.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/termination.cpp.o -MF CMakeFiles/mdrun-io-test.dir/termination.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/termination.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisim.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisimtest.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisimtest.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-single-rank-algorithms-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-single-rank-algorithms-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-single-rank-algorithms-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o -MF CMakeFiles/utility-test.dir/stringutil.cpp.o.d -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/stringutil.cpp [ 94%] Linking CXX executable ../../../../bin/minimize-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimize-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/minimize-test.dir/minimize.cpp.o" "CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/minimize-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o" "CMakeFiles/mdrun-test.dir/swapcoords.cpp.o" "CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o" "CMakeFiles/mdrun-test.dir/freezegroups.cpp.o" "CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o" "CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o" "CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/rerun.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 94%] Built target mdtypes-test [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o -MF CMakeFiles/utility-test.dir/template_mp.cpp.o.d -o CMakeFiles/utility-test.dir/template_mp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/template_mp.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-tpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o" "CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/replicaexchange.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 94%] Built target ewald-test [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o -MF CMakeFiles/utility-test.dir/typetraits.cpp.o.d -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/typetraits.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY 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-MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/replicaexchange_equivalence.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-io-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o" "CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o" "CMakeFiles/mdrun-io-test.dir/grompp.cpp.o" "CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o" "CMakeFiles/mdrun-io-test.dir/termination.cpp.o" "CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 94%] Built target pdb2gmx1-test [ 94%] Linking CXX executable ../../../../bin/mdrun-multisim-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 95%] Built target gmxana-test [ 95%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pmetest.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_basic.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_coupling.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 95%] Built target pdb2gmx3-test [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 96%] Built target energyanalysis-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 96%] Built target topology-test [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/utility-test.dir/alignedallocator.cpp.o" "CMakeFiles/utility-test.dir/arrayref.cpp.o" "CMakeFiles/utility-test.dir/booltype.cpp.o" "CMakeFiles/utility-test.dir/bitmask32.cpp.o" "CMakeFiles/utility-test.dir/bitmask64.cpp.o" "CMakeFiles/utility-test.dir/bitmask128.cpp.o" "CMakeFiles/utility-test.dir/cstringutil.cpp.o" "CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o" "CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o" "CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o" "CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o" "CMakeFiles/utility-test.dir/listoflists.cpp.o" "CMakeFiles/utility-test.dir/logger.cpp.o" "CMakeFiles/utility-test.dir/message_string_collector.cpp.o" "CMakeFiles/utility-test.dir/path.cpp.o" "CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o" "CMakeFiles/utility-test.dir/range.cpp.o" "CMakeFiles/utility-test.dir/strconvert.cpp.o" "CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o" "CMakeFiles/utility-test.dir/stringutil.cpp.o" "CMakeFiles/utility-test.dir/template_mp.cpp.o" "CMakeFiles/utility-test.dir/textreader.cpp.o" "CMakeFiles/utility-test.dir/textwriter.cpp.o" "CMakeFiles/utility-test.dir/typetraits.cpp.o" "CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_constraints.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/freeenergy.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 96%] Built target nonbonded-fep-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 96%] Built target awh-test [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-mpi-pme-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-pme-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o" "CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-pme-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-basic-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 96%] Built target coordinateio-test [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-coordination-coupling-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-coupling-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-coupling-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pull_rotation.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/depend gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulator.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o -MF CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o.d -o CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/virtualsites.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make 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/usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/mdmodulesnotifier.cpp [ 98%] Linking CXX executable ../../../../bin/mdrun-coordination-constraints-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-constraints-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-constraints-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 98%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-equivalence-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-equivalence-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -MF CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinity.cpp /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpformat.cpp [ 98%] Linking CXX executable ../../../../bin/mdrun-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o" "CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-fep-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o" "CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 98%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 98%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o" "CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o" "CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 98%] Linking CXX executable ../../../../bin/mdrun-rotation-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-rotation-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o" "CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-rotation-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 98%] Linking CXX executable ../../../../bin/mdrun-simulator-comparison-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-simulator-comparison-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o" "CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-simulator-comparison-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 98%] Linking CXX executable ../../../../bin/mdrun-vsites-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-vsites-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o" "CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-vsites-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -MF CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o.d -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/analysisdata.cpp [ 98%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -MF CMakeFiles/analysisdata-test.dir/arraydata.cpp.o.d -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/arraydata.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Built target options-test [ 98%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/mdrun-pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-pull-test.dir/pull.cpp.o" "CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-pull-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so [ 98%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o" "CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/onlinehelp-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/bin/gmake -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/moduletest.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/angle.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Built target fileio-test [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlineparser.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o -MF CMakeFiles/analysisdata-test.dir/average.cpp.o.d -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/average.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o -MF CMakeFiles/analysisdata-test.dir/histogram.cpp.o.d -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/histogram.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o -MF CMakeFiles/commandline-test.dir/filenm.cpp.o.d -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/filenm.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Built target math-test [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd 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-isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o -MF CMakeFiles/commandline-test.dir/pargs.cpp.o.d -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/pargs.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -MF CMakeFiles/analysisdata-test.dir/lifetime.cpp.o.d -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/lifetime.cpp /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/distance.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/dssp.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o" "CMakeFiles/analysisdata-test.dir/arraydata.cpp.o" "CMakeFiles/analysisdata-test.dir/average.cpp.o" "CMakeFiles/analysisdata-test.dir/histogram.cpp.o" "CMakeFiles/analysisdata-test.dir/lifetime.cpp.o" "CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/analysisdata-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o" "CMakeFiles/commandline-test.dir/filenm.cpp.o" "CMakeFiles/commandline-test.dir/pargs.cpp.o" "CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/commandline-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/freevolume.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Built target onlinehelp-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Built target mdrunutility-mpi-test [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/gyrate.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [ 98%] Built target mdlib-test [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/hbond.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrunutility-test [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/msd.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/pairdist.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target utility-test [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/rdf.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target selection-test [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/sasa.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/select.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/scattering.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/unionfind.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags "CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target colvars_applied_forces-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target qmmm_applied_forces-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target analysisdata-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target commandline-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target nbnxm-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target tool-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target gmxpreprocess-test /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* 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gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-non-integrator-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-tpi-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target minimize-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-multisim-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-rotation-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-coordination-coupling-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-multisim-replex-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-multisim-replex-equivalence-test [100%] Built target mdrun-coordination-basic-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-mpi-pme-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-simulator-comparison-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-vsites-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-coordination-constraints-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-fep-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target mdrun-pull-test /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/CMakeFiles/tests.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target tests /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build Connected to MAKE jobserver Start 1: TestUtilsUnitTests 1/77 Test #1: TestUtilsUnitTests ........................ Passed 0.52 sec Start 2: TestUtilsMpiUnitTests 2/77 Test #2: TestUtilsMpiUnitTests ..................... Passed 0.55 sec Start 3: UtilityUnitTests 3/77 Test #3: UtilityUnitTests .......................... Passed 0.52 sec Start 4: UtilityMpiUnitTests 4/77 Test #4: UtilityMpiUnitTests ....................... Passed 0.54 sec Start 5: GmxlibTests 5/77 Test #5: GmxlibTests ............................... Passed 0.52 sec Start 6: MdlibUnitTest 6/77 Test #6: MdlibUnitTest ............................. Passed 0.67 sec Start 7: AwhTest 7/77 Test #7: AwhTest ................................... Passed 0.56 sec Start 8: DensityFittingAppliedForcesUnitTest 8/77 Test #8: DensityFittingAppliedForcesUnitTest ....... Passed 0.51 sec Start 9: QMMMAppliedForcesUnitTest 9/77 Test #9: QMMMAppliedForcesUnitTest ................. Passed 0.54 sec Start 10: ColvarsAppliedForcesUnitTest 10/77 Test #10: ColvarsAppliedForcesUnitTest .............. Passed 0.56 sec Start 11: AppliedForcesUnitTest 11/77 Test #11: AppliedForcesUnitTest ..................... Passed 0.50 sec Start 12: ListedForcesTest 12/77 Test #12: ListedForcesTest .......................... Passed 0.54 sec Start 13: NbnxmTests 13/77 Test #13: NbnxmTests ................................ Passed 0.69 sec Start 14: CommandLineUnitTests 14/77 Test #14: CommandLineUnitTests ...................... Passed 0.51 sec Start 15: DomDecTests 15/77 Test #15: DomDecTests ............................... Passed 0.51 sec Start 16: DomDecMpiTests 16/77 Test #16: DomDecMpiTests ............................ Passed 0.56 sec Start 17: EwaldUnitTests 17/77 Test #17: EwaldUnitTests ............................ Passed 0.73 sec Start 18: FFTUnitTests 18/77 Test #18: FFTUnitTests .............................. Passed 0.59 sec Start 19: GpuUtilsUnitTests 19/77 Test #19: GpuUtilsUnitTests ......................... Passed 0.51 sec Start 20: HardwareUnitTests 20/77 Test #20: HardwareUnitTests ......................... Passed 0.52 sec Start 21: MathUnitTests 21/77 Test #21: MathUnitTests ............................. Passed 0.57 sec Start 22: MdrunUtilityUnitTests 22/77 Test #22: MdrunUtilityUnitTests ..................... Passed 0.51 sec Start 23: MdrunUtilityMpiUnitTests 23/77 Test #23: MdrunUtilityMpiUnitTests .................. Passed 0.54 sec Start 24: MDSpanTests 24/77 Test #24: MDSpanTests ............................... Passed 0.50 sec Start 25: MdtypesUnitTest 25/77 Test #25: MdtypesUnitTest ........................... Passed 0.52 sec Start 26: OnlineHelpUnitTests 26/77 Test #26: OnlineHelpUnitTests ....................... Passed 0.51 sec Start 27: OptionsUnitTests 27/77 Test #27: OptionsUnitTests .......................... Passed 0.51 sec Start 28: PbcutilUnitTest 28/77 Test #28: PbcutilUnitTest ........................... Passed 0.51 sec Start 29: RandomUnitTests 29/77 Test #29: RandomUnitTests ........................... Passed 0.51 sec Start 30: RestraintTests 30/77 Test #30: RestraintTests ............................ Passed 0.50 sec Start 31: TableUnitTests 31/77 Test #31: TableUnitTests ............................ Passed 0.77 sec Start 32: TaskAssignmentUnitTests 32/77 Test #32: TaskAssignmentUnitTests ................... Passed 0.52 sec Start 33: GmxTimingTests 33/77 Test #33: GmxTimingTests ............................ Passed 0.51 sec Start 34: TopologyTest 34/77 Test #34: TopologyTest .............................. Passed 0.55 sec Start 35: PullTest 35/77 Test #35: PullTest .................................. Passed 0.50 sec Start 36: SimdUnitTests 36/77 Test #36: SimdUnitTests ............................. Passed 0.53 sec Start 37: CompatibilityHelpersTests 37/77 Test #37: CompatibilityHelpersTests ................. Passed 0.51 sec Start 38: GmxAnaTest 38/77 Test #38: GmxAnaTest ................................ Passed 1.29 sec Start 39: GmxPreprocessTests 39/77 Test #39: GmxPreprocessTests ........................ Passed 1.44 sec Start 40: Pdb2gmx1Test 40/77 Test #40: Pdb2gmx1Test .............................. Passed 1.33 sec Start 41: Pdb2gmx2Test 41/77 Test #41: Pdb2gmx2Test .............................. Passed 2.92 sec Start 42: Pdb2gmx3Test 42/77 Test #42: Pdb2gmx3Test .............................. Passed 2.13 sec Start 43: CorrelationsTest 43/77 Test #43: CorrelationsTest .......................... Passed 1.13 sec Start 44: AnalysisDataUnitTests 44/77 Test #44: AnalysisDataUnitTests ..................... Passed 0.52 sec Start 45: CoordinateIOTests 45/77 Test #45: CoordinateIOTests ......................... Passed 0.55 sec Start 46: TrajectoryAnalysisUnitTests 46/77 Test #46: TrajectoryAnalysisUnitTests ............... Passed 6.82 sec Start 47: EnergyAnalysisUnitTests 47/77 Test #47: EnergyAnalysisUnitTests ................... Passed 0.63 sec Start 48: ToolUnitTests 48/77 Test #48: ToolUnitTests ............................. Passed 2.96 sec Start 49: FileIOTests 49/77 Test #49: FileIOTests ............................... Passed 0.52 sec Start 50: SelectionUnitTests 50/77 Test #50: SelectionUnitTests ........................ Passed 0.63 sec Start 51: MdrunOutputTests 51/77 Test #51: MdrunOutputTests .......................... Passed 0.63 sec Start 52: MdrunModulesTests 52/77 Test #52: MdrunModulesTests ......................... Passed 0.76 sec Start 53: MdrunIOTests 53/77 Test #53: MdrunIOTests .............................. Passed 3.02 sec Start 54: MdrunTestsOneRank 54/77 Test #54: MdrunTestsOneRank ......................... Passed 2.73 sec Start 55: MdrunTestsTwoRanks 55/77 Test #55: MdrunTestsTwoRanks ........................ Passed 2.70 sec Start 56: MdrunSingleRankAlgorithmsTests 56/77 Test #56: MdrunSingleRankAlgorithmsTests ............ Passed 1.94 sec Start 57: Minimize1RankTests 57/77 Test #57: Minimize1RankTests ........................ Passed 1.70 sec Start 58: Minimize2RankTests 58/77 Test #58: Minimize2RankTests ........................ Passed 1.73 sec Start 59: MdrunNonIntegratorTests 59/77 Test #59: MdrunNonIntegratorTests ................... Passed 4.89 sec Start 60: MdrunTpiTests 60/77 Test #60: MdrunTpiTests ............................. Passed 1.31 sec Start 61: MdrunMpiTests 61/77 Test #61: MdrunMpiTests ............................. Passed 0.96 sec Start 62: MdrunMultiSimTests 62/77 Test #62: MdrunMultiSimTests ........................ Passed 0.65 sec Start 63: MdrunMultiSimReplexTests 63/77 Test #63: MdrunMultiSimReplexTests .................. Passed 0.64 sec Start 64: MdrunMultiSimReplexEquivalenceTests 64/77 Test #64: MdrunMultiSimReplexEquivalenceTests ....... Passed 4.53 sec Start 65: MdrunMpi1RankPmeTests 65/77 Test #65: MdrunMpi1RankPmeTests ..................... Passed 1.31 sec Start 66: MdrunMpi2RankPmeTests 66/77 Test #66: MdrunMpi2RankPmeTests ..................... Passed 1.82 sec Start 67: MdrunCoordinationBasicTests1Rank 67/77 Test #67: MdrunCoordinationBasicTests1Rank .......... Passed 0.59 sec Start 68: MdrunCoordinationBasicTests2Ranks 68/77 Test #68: MdrunCoordinationBasicTests2Ranks ......... Passed 0.63 sec Start 69: MdrunCoordinationCouplingTests1Rank 69/77 Test #69: MdrunCoordinationCouplingTests1Rank ....... Passed 1.81 sec Start 70: MdrunCoordinationCouplingTests2Ranks 70/77 Test #70: MdrunCoordinationCouplingTests2Ranks ...... Passed 1.89 sec Start 71: MdrunCoordinationConstraintsTests1Rank 71/77 Test #71: MdrunCoordinationConstraintsTests1Rank .... Passed 29.98 sec Start 72: MdrunCoordinationConstraintsTests2Ranks 72/77 Test #72: MdrunCoordinationConstraintsTests2Ranks ... Passed 31.58 sec Start 73: MdrunFEPTests 73/77 Test #73: MdrunFEPTests ............................. Passed 2.91 sec Start 74: MdrunPullTests 74/77 Test #74: MdrunPullTests ............................ Passed 2.22 sec Start 75: MdrunRotationTests 75/77 Test #75: MdrunRotationTests ........................ Passed 0.65 sec Start 76: MdrunSimulatorComparison 76/77 Test #76: MdrunSimulatorComparison .................. Passed 12.13 sec Start 77: MdrunVirtualSiteTests 77/77 Test #77: MdrunVirtualSiteTests ..................... Passed 0.90 sec 100% tests passed, 0 tests failed out of 77 Label Time Summary: GTest = 273.08 sec*proc (77 tests) IntegrationTest = 126.31 sec*proc (22 tests) MpiTest = 172.54 sec*proc (21 tests) QuickGpuTest = 37.54 sec*proc (18 tests) SlowGpuTest = 192.79 sec*proc (14 tests) SlowTest = 118.77 sec*proc (13 tests) UnitTest = 28.01 sec*proc (42 tests) Total Test time (real) = 159.80 sec gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target run-ctest-nophys /usr/bin/gmake -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target missing-tests-notice /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/CMakeFiles/check.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' [100%] Built target check gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build/CMakeFiles 0 gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/mpich_d/redhat-linux-build' + [[ mpich = openmpi ]] + popd ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + test -n mpich + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd openmpi_d + [[ openmpi = openmpi ]] + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + /usr/bin/cmake --build redhat-linux-build -j48 --verbose --target check Change Dir: '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j48 check /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 check gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -B/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/CMakeFiles 95 /usr/bin/gmake -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/external/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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Dependencies file "src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/build Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' Dependencies file "src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target energyanalysis Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target thread_mpi Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target mdrun_objlib Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target scanner Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target linearalgebra Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 0%] Generating release version information Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.13 -D PROJECT_VERSION=2024.3-Fedora42 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora42 -P /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 0%] Building CXX object src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/external/googletest/googletest && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/src/gtest-all.cc Consolidate compiler generated dependencies of target options gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build [ 0%] Built target energyanalysis [ 0%] Built target thread_mpi [ 0%] Built target mdrun_objlib [ 0%] Built target linearalgebra [ 0%] Built target scanner /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/options/CMakeFiles/options.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" [ 0%] Built target options [ 0%] Built target release-version-info Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target pulling gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/pulling/CMakeFiles/pulling.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' Consolidate compiler generated dependencies of target colvars_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build [ 1%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/colvars_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". [ 3%] Built target colvars_objlib Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". 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Consolidate compiler generated dependencies of target taskassignment gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 3%] Built target taskassignment Consolidate compiler generated dependencies of target modularsimulator gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 5%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Consolidate compiler generated dependencies of target libgromacs gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 62%] Built target libgromacs [ 62%] Linking CXX static library ../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build.make src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/depend /usr/bin/gmake -f src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/build.make src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/nonbonded/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend /usr/bin/gmake -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend /usr/bin/gmake -f src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/build.make src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/depend /usr/bin/gmake -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend /usr/bin/gmake -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend /usr/bin/gmake -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fft/tests 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend /usr/bin/gmake -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build.make src/gromacs/timing/tests/CMakeFiles/timing-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend /usr/bin/gmake -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/timing/tests 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src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/tests 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend /usr/bin/gmake -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests 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gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build.make src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build /usr/bin/gmake -f src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/build /usr/bin/gmake -f src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/build.make src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make 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src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build /usr/bin/gmake -f src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build.make src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build /usr/bin/gmake -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build /usr/bin/gmake -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build gmake[3]: 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src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 63%] Building CXX object src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build /usr/bin/gmake -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build [ 63%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 63%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 64%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o /usr/bin/gmake -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build /usr/bin/gmake -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmminputgenerator.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxlib/nonbonded/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/nonbonded/tests/nb_free_energy.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/energyreader.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external 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-std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -MF CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o.d -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/mpitest.cpp /usr/bin/gmake -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 64%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o [ 65%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o -MF CMakeFiles/testutils-test.dir/interactivetest.cpp.o.d -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/interactivetest.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o -MF CMakeFiles/utility-test.dir/alignedallocator.cpp.o.d -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/alignedallocator.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -MF CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o.d -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o -MF CMakeFiles/awh-test.dir/awh_setup.cpp.o.d -o CMakeFiles/awh-test.dir/awh_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/awh_setup.cpp [ 65%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o [ 65%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o [ 65%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o [ 65%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o [ 65%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o [ 65%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o [ 65%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfitting.cpp [ 65%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -MF CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o.d -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -MF CMakeFiles/nbnxm-test.dir/exclusions.cpp.o.d -o CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/exclusions.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarspreprocessor.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/mock_helptopic.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 65%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o [ 65%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o [ 65%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -MF CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o.d -o CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/haloexchange_mpi.cpp [ 65%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o [ 65%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o [ 65%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o [ 65%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o [ 65%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o -MF CMakeFiles/domdec-test.dir/hashedmap.cpp.o.d -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/hashedmap.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o -MF CMakeFiles/listed_forces-test.dir/bonded.cpp.o.d -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/bonded.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fft/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o -MF CMakeFiles/fft-test.dir/fft.cpp.o.d -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/tests/fft.cpp [ 65%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o [ 65%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -MF CMakeFiles/hardware-test.dir/cpuinfo.cpp.o.d -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/cpuinfo.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -MF CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o.d -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/abstractoptionstorage.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -MF CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o.d -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/accessor_policy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -MF CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o.d -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/arrayrefwithpadding.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/enerdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/enerdata.cpp [ 65%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o -MF CMakeFiles/pbcutil-test.dir/com.cpp.o.d -o CMakeFiles/pbcutil-test.dir/com.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/com.cpp [ 65%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o [ 66%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o [ 66%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -MF CMakeFiles/random-test.dir/exponentialdistribution.cpp.o.d -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/exponentialdistribution.cpp [ 66%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o [ 66%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o [ 66%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o [ 66%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o [ 66%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o [ 66%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o -MF CMakeFiles/table-test.dir/splinetable.cpp.o.d -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tables/tests/splinetable.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -MF CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o -MF CMakeFiles/restraintpotential-test.dir/manager.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/restraint/tests/manager.cpp [ 66%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o [ 66%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o -MF CMakeFiles/timing-test.dir/timing.cpp.o.d -o CMakeFiles/timing-test.dir/timing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/tests/timing.cpp [ 66%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o -MF CMakeFiles/gmxana-test.dir/entropy.cpp.o.d -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/entropy.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o -MF CMakeFiles/simd-test.dir/base.cpp.o.d -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/base.cpp [ 66%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o [ 66%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o -MF CMakeFiles/compat-test.dir/mp11.cpp.o.d -o CMakeFiles/compat-test.dir/mp11.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/tests/mp11.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/taskassignment/tests/usergpuids.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o -MF CMakeFiles/topology-test.dir/atoms.cpp.o.d -o CMakeFiles/topology-test.dir/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/atoms.cpp [ 66%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/editconf.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o -MF CMakeFiles/correlations-test.dir/autocorr.cpp.o.d -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 66%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o [ 66%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/datatest.cpp [ 66%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o -MF CMakeFiles/pull-test.dir/pull.cpp.o.d -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/tests/pull.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o -MF CMakeFiles/coordinateio-test.dir/builder.cpp.o.d -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/builder.cpp [ 66%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/energyanalysis/tests/energyterm.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 66%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 66%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o -MF CMakeFiles/fileio-test.dir/checkpoint.cpp.o.d -o CMakeFiles/fileio-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/checkpoint.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o -MF CMakeFiles/selection-test.dir/indexutil.cpp.o.d -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/indexutil.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/tool-test.dir/dump.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/dump.cpp [ 66%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_availability.cpp [ 66%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o -MF CMakeFiles/compat-test.dir/pointers.cpp.o.d -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/compat/tests/pointers.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -MF CMakeFiles/correlations-test.dir/correlationdataset.cpp.o.d -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 66%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -MF CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o.d -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/hardware/tests/hardwaretopology.cpp [ 66%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -MF CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o.d -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 67%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/timing/tests/CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 67%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/energycomparison.cpp [ 68%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -MF CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o.d -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 68%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmtopologypreprocessor.cpp [ 68%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o -MF CMakeFiles/fileio-test.dir/confio.cpp.o.d -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/confio.cpp [ 68%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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-MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calcvir.cpp.o -MF CMakeFiles/mdlib-test.dir/calcvir.cpp.o.d -o CMakeFiles/mdlib-test.dir/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/calcvir.cpp [ 69%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o -MF CMakeFiles/random-test.dir/gammadistribution.cpp.o.d -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/gammadistribution.cpp [ 69%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -MF CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o.d -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 69%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o -MF CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o.d -o CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/observablesreducer.cpp [ 70%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 [ 70%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 70%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o" "CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-mpi-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/device_stream_manager.cpp [ 70%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 70%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o -MF CMakeFiles/correlations-test.dir/expfit.cpp.o.d -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/expfit.cpp [ 70%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/restraintpotential-test.dir/manager.cpp.o" "CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/restraintpotential-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 70%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingamplitudelookup.cpp [ 71%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd 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src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../bin/timing-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/timing-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/timing-test.dir/timing.cpp.o" "CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/timing-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 71%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o -MF CMakeFiles/tool-test.dir/make_ndx.cpp.o.d -o CMakeFiles/tool-test.dir/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/make_ndx.cpp [ 71%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvars.cpp [ 71%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 71%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o -MF CMakeFiles/mdspan-test.dir/extensions.cpp.o.d -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/extensions.cpp [ 71%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o" "CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-mpi-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_openmpi_d.a ../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../lib/libtestutils.a ../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../lib/libgmock.a ../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 71%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o -MF CMakeFiles/simd-test.dir/scalar.cpp.o.d -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar.cpp [ 71%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o -MF CMakeFiles/math-test.dir/boxmatrix.cpp.o.d -o CMakeFiles/math-test.dir/boxmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/boxmatrix.cpp [ 71%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o -MF CMakeFiles/mdlib-test.dir/constr.cpp.o.d -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constr.cpp [ 71%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -MF CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 73%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/applied_forces-test.dir/electricfield.cpp.o" "CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/applied_forces-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 73%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernel_test.cpp [ 73%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include 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CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake [ 73%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genion.cpp /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a "CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o" "CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 73%] Built target onlinehelp-test-shared [ 73%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 [ 73%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DGTEST_LANG_CXX11 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-Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/pull-test.dir/pull.cpp.o" "CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/pulling.dir/output.cpp.o ../CMakeFiles/pulling.dir/pull.cpp.o ../CMakeFiles/pulling.dir/pull_rotation.cpp.o ../CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o ../CMakeFiles/pulling.dir/pullutil.cpp.o ../CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so -lmuparser /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 73%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o -MF CMakeFiles/awh-test.dir/bias.cpp.o.d -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/bias.cpp [ 73%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -MF CMakeFiles/ewald-test.dir/pmegathertest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmegathertest.cpp [ 73%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o -MF CMakeFiles/selection-test.dir/nbsearch.cpp.o.d -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/nbsearch.cpp [ 74%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o" "CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o" "CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/energyanalysis-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 74%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o -MF CMakeFiles/random-test.dir/normaldistribution.cpp.o.d -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/normaldistribution.cpp [ 74%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/compat-test.dir/mp11.cpp.o" "CMakeFiles/compat-test.dir/pointers.cpp.o" "CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/compat-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 74%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o -MF CMakeFiles/tool-test.dir/report_methods.cpp.o.d -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/report_methods.cpp [ 75%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/moduletest.cpp [ 76%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a "CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o" "CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 76%] Built target mdrunutility-test-shared [ 76%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -MF CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o.d -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 76%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o -MF CMakeFiles/utility-test.dir/arrayref.cpp.o.d -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/arrayref.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o" "CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o ../CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o ../CMakeFiles/taskassignment.dir/findallgputasks.cpp.o ../CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o ../CMakeFiles/taskassignment.dir/resourcedivision.cpp.o ../CMakeFiles/taskassignment.dir/taskassignment.cpp.o ../CMakeFiles/taskassignment.dir/usergpuids.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 76%] Linking CXX executable ../../../../bin/domdec-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o" "CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-mpi-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 76%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/fileio-test.dir/filemd5.cpp.o.d -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/filemd5.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -MF CMakeFiles/math-test.dir/coordinatetransformation.cpp.o.d -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/coordinatetransformation.cpp [ 76%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 [ 76%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxana/tests/gmx_traj.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath 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Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/genrestr.cpp [ 77%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 77%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/colvars/tests/colvarsoptions.cpp [ 77%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx3-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 77%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o -MF CMakeFiles/listed_forces-test.dir/pairs.cpp.o.d -o CMakeFiles/listed_forces-test.dir/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/pairs.cpp [ 77%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o -MF CMakeFiles/awh-test.dir/biasgrid.cpp.o.d -o CMakeFiles/awh-test.dir/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biasgrid.cpp [ 78%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o -MF CMakeFiles/simd-test.dir/scalar_util.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/scalar_util.cpp [ 80%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -MF CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o.d -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/testasserts_tests.cpp [ 80%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx1-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 80%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/fft-test.dir/fft.cpp.o" "CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fft-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o -MF CMakeFiles/random-test.dir/seed.cpp.o.d -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/seed.cpp [ 81%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingoptions.cpp [ 81%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx2-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 81%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o [ 81%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o -MF CMakeFiles/tool-test.dir/trjconv.cpp.o.d -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/trjconv.cpp cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gen_maxwell_velocities.cpp [ 82%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o -MF CMakeFiles/fileio-test.dir/filetypes.cpp.o.d -o CMakeFiles/fileio-test.dir/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/filetypes.cpp [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulatorcomparison.cpp [ 82%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdspan/tests/mdspan.cpp [ 82%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/correlations-test.dir/autocorr.cpp.o" "CMakeFiles/correlations-test.dir/correlationdataset.cpp.o" "CMakeFiles/correlations-test.dir/expfit.cpp.o" "CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o" "CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/correlations-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 82%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxlib/nonbonded/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/gmxana-test cd 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-Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/gmxana-test.dir/entropy.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o" "CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxana-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 82%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o -MF CMakeFiles/options-test.dir/filenameoption.cpp.o.d -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/filenameoption.cpp [ 83%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o -MF CMakeFiles/topology-test.dir/idef.cpp.o.d -o CMakeFiles/topology-test.dir/idef.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/idef.cpp [ 83%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -DGMX_CP2K=0 -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/qmmm/tests/qmmmforceprovider.cpp [ 83%] Linking CXX executable ../../../../../bin/nonbonded-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nonbonded-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o" "CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/nonbonded-fep-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi_d.a ../../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgmock.a ../../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 83%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o -MF CMakeFiles/selection-test.dir/poscalc.cpp.o.d -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/poscalc.cpp [ 83%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/table-test.dir/splinetable.cpp.o" "CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/table-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o -MF CMakeFiles/math-test.dir/densityfit.cpp.o.d -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/densityfit.cpp [ 83%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -MF CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o.d -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/tests/xvgtest_tests.cpp [ 83%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/tests/checkpointdata.cpp [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/terminationhelper.cpp [ 83%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestdata.cpp [ 83%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/tests/pbcenums.cpp [ 83%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o -MF CMakeFiles/awh-test.dir/biassharing.cpp.o.d -o CMakeFiles/awh-test.dir/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/applied_forces/awh/tests/biassharing.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" 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/usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmesolvetest.cpp [ 83%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o -MF CMakeFiles/topology-test.dir/index.cpp.o.d -o CMakeFiles/topology-test.dir/index.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/index.cpp [ 83%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/nbnxm/tests/kernelsetup.cpp [ 84%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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86%] Linking CXX executable ../../../../../bin/density_fitting_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/density_fitting_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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-DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o -MF CMakeFiles/simd-test.dir/simd.cpp.o.d -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd.cpp [ 86%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o -MF CMakeFiles/tool-test.dir/convert-tpr.cpp.o.d -o CMakeFiles/tool-test.dir/convert-tpr.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/tools/tests/convert-tpr.cpp [ 86%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o" "CMakeFiles/mdspan-test.dir/extents.cpp.o" "CMakeFiles/mdspan-test.dir/extensions.cpp.o" "CMakeFiles/mdspan-test.dir/layouts.cpp.o" "CMakeFiles/mdspan-test.dir/mdspan.cpp.o" "CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdspan-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 86%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/testutils-test.dir/interactivetest.cpp.o" "CMakeFiles/testutils-test.dir/refdata_tests.cpp.o" "CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o" "CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o" "CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_openmpi_d.a ../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../lib/libtestutils.a ../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../lib/libgmock.a ../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 86%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -MF CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 87%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/pbcutil-test.dir/com.cpp.o" "CMakeFiles/pbcutil-test.dir/mshift.cpp.o" "CMakeFiles/pbcutil-test.dir/pbc.cpp.o" "CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o" "CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pbcutil-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 87%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -MF CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o.d -o CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/listed_forces/tests/position_restraints.cpp [ 87%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -MF CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 87%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/booltype.cpp.o -MF CMakeFiles/utility-test.dir/booltype.cpp.o.d -o CMakeFiles/utility-test.dir/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/booltype.cpp [ 87%] Linking CXX executable ../../../../bin/nbnxm-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nbnxm-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/nbnxm-test.dir/exclusions.cpp.o" "CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o" "CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o" "CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/nbnxm-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o -MF CMakeFiles/mdlib-test.dir/ebin.cpp.o.d -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/ebin.cpp [ 87%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 87%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/hardware-test.dir/cpuinfo.cpp.o" "CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/device_management.cpp.o" "CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/hardware-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=1 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o -MF CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/tests/typecasts.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 88%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests && 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../../bin/qmmm_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/qmmm_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto 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"CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/qmmm_applied_forces-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi_d.a ../../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/grompp_directives.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 88%] Linking CXX executable ../../../../../bin/colvars_applied_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/colvars_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/colvars_applied_forces-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi_d.a ../../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 88%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o" "CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o" "CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o" "CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o" "CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o" "CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o" "CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gpu_utils-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 88%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o.d -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 88%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/tool-test.dir/dump.cpp.o" "CMakeFiles/tool-test.dir/helpwriting.cpp.o" "CMakeFiles/tool-test.dir/make_ndx.cpp.o" "CMakeFiles/tool-test.dir/report_methods.cpp.o" "CMakeFiles/tool-test.dir/trjconv.cpp.o" "CMakeFiles/tool-test.dir/convert-tpr.cpp.o" "CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/tool-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 88%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o -MF CMakeFiles/options-test.dir/option.cpp.o.d -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/option.cpp [ 89%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/requirements.cpp [ 89%] Linking CXX static library ../../../../lib/libmdrun_test_infrastructure.a cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o /usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pmetestcommon.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target mdrun_test_infrastructure [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o -MF CMakeFiles/math-test.dir/functions.cpp.o.d -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/functions.cpp [ 89%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/fileio-test.dir/readinp.cpp.o.d -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/readinp.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target utility-mpi-test [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask32.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/massrepartitioning.cpp [ 89%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/listed_forces-test.dir/bonded.cpp.o" "CMakeFiles/listed_forces-test.dir/pairs.cpp.o" "CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o" "CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/listed_forces-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setatoms.cpp [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o -MF CMakeFiles/simd-test.dir/simd_integer.cpp.o.d -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_integer.cpp [ 89%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o -MF CMakeFiles/topology-test.dir/topsort.cpp.o.d -o CMakeFiles/topology-test.dir/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/tests/topsort.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/readir.cpp [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -MF CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/mdmodulesnotifier.cpp [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests && 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -MF CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setbothtime.cpp [ 89%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" 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-isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o -MF CMakeFiles/selection-test.dir/selectionoption.cpp.o.d -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/selectionoption.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target restraintpotential-test [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -MF CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/setstarttime.cpp [ 89%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/random-test.dir/exponentialdistribution.cpp.o" "CMakeFiles/random-test.dir/gammadistribution.cpp.o" "CMakeFiles/random-test.dir/normaldistribution.cpp.o" "CMakeFiles/random-test.dir/seed.cpp.o" "CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o" "CMakeFiles/random-test.dir/threefry.cpp.o" "CMakeFiles/random-test.dir/uniformintdistribution.cpp.o" "CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o" "CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/random-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o -MF CMakeFiles/options-test.dir/repeatingsection.cpp.o.d -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/repeatingsection.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target testutils-mpi-test [ 89%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o -MF CMakeFiles/ewald-test.dir/pme.cpp.o.d -o CMakeFiles/ewald-test.dir/pme.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/ewald/tests/pme.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake "--color=" [ 89%] Built target timing-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o -MF CMakeFiles/math-test.dir/gausstransform.cpp.o.d -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/gausstransform.cpp [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o -MF CMakeFiles/utility-test.dir/bitmask128.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/bitmask128.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/expanded.cpp.o -MF CMakeFiles/mdlib-test.dir/expanded.cpp.o.d -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/expanded.cpp [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o -MF CMakeFiles/utility-test.dir/cstringutil.cpp.o.d -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/cstringutil.cpp [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -MF CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o.d -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 89%] Linking CXX executable ../../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/awh-test.dir/awh_setup.cpp.o" "CMakeFiles/awh-test.dir/bias.cpp.o" "CMakeFiles/awh-test.dir/biasgrid.cpp.o" "CMakeFiles/awh-test.dir/biassharing.cpp.o" "CMakeFiles/awh-test.dir/biasstate.cpp.o" "CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o" "CMakeFiles/awh-test.dir/friction_metric.cpp.o" "CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/awh-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_openmpi_d.a ../../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o -MF CMakeFiles/options-test.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/timeunitmanager.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target domdec-test [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" 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-DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o -MF CMakeFiles/fileio-test.dir/xvgio.cpp.o.d -o CMakeFiles/fileio-test.dir/xvgio.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/fileio/tests/xvgio.cpp [ 89%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o" "CMakeFiles/ewald-test.dir/pmegathertest.cpp.o" "CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o" "CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o" "CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o" "CMakeFiles/ewald-test.dir/pme.cpp.o" "CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/ewald-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o -MF CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o.d -o CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/freeenergyparameters.cpp [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrog.cpp [ 89%] Linking CXX executable ../../../../bin/mdtypes-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdtypes-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdtypes-test.dir/enerdata.cpp.o" "CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o" "CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o" "CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o" "CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o" "CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdtypes-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 89%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -MF CMakeFiles/coordinateio-test.dir/testmodule.cpp.o.d -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/coordinateio/tests/testmodule.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o" "CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gmxpreprocess/tests/topdirs.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target pull-test [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/topology-test.dir/atoms.cpp.o" "CMakeFiles/topology-test.dir/exclusionblocks.cpp.o" "CMakeFiles/topology-test.dir/idef.cpp.o" "CMakeFiles/topology-test.dir/index.cpp.o" "CMakeFiles/topology-test.dir/mtop.cpp.o" "CMakeFiles/topology-test.dir/symtab.cpp.o" "CMakeFiles/topology-test.dir/topsort.cpp.o" "CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/topology-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o -MF CMakeFiles/math-test.dir/densityfittingforce.cpp.o.d -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/densityfittingforce.cpp [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlineparser.cpp [ 89%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o -MF CMakeFiles/selection-test.dir/toputils.cpp.o.d -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/tests/toputils.cpp [ 89%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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../../../../bin/coordinateio-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpformat.cpp [ 89%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o" "CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o" "CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a In file included from /usr/include/c++/14/istream:41, from /usr/include/c++/14/sstream:40, from /usr/include/c++/14/bits/quoted_string.h:38, from /usr/include/c++/14/iomanip:50, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest.h:54, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include/testutils/testasserts.h:64, from /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:53: In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘testing::Message::operator<< (double const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (double const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:397:86: /usr/include/c++/14/ostream:229:25: warning: ‘maxUlpDiffPos’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:281:23: note: ‘maxUlpDiffPos’ was declared here 281 | real maxUlpDiffPos; | ^~~~~~~~~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘testing::Message::operator<< (double const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (double const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:399:63: /usr/include/c++/14/ostream:229:25: warning: ‘refValMaxUlpDiff’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:282:23: note: ‘refValMaxUlpDiff’ was declared here 282 | real refValMaxUlpDiff, simdValMaxUlpDiff; | ^~~~~~~~~~~~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘testing::Message::operator<< (double const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (double const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:400:63: /usr/include/c++/14/ostream:229:25: warning: ‘simdValMaxUlpDiff’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, double (*)(double), gmx::SimdDouble (*)(gmx::SimdDouble), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_math.cpp:282:41: note: ‘simdValMaxUlpDiff’ was declared here 282 | real refValMaxUlpDiff, simdValMaxUlpDiff; | ^~~~~~~~~~~~~~~~~ [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target fft-test [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -MF CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o.d -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o -MF CMakeFiles/simd-test.dir/simd_memory.cpp.o.d -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_memory.cpp /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -MF CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o.d -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/analysisdata.cpp [ 89%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o -MF CMakeFiles/math-test.dir/invertmatrix.cpp.o.d -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/invertmatrix.cpp [ 89%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpmanager.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target taskassignment-test [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestdata.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target domdec-mpi-test [ 89%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o -MF CMakeFiles/options-test.dir/treesupport.cpp.o.d -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/options/tests/treesupport.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/selection-test.dir/indexutil.cpp.o" "CMakeFiles/selection-test.dir/nbsearch.cpp.o" "CMakeFiles/selection-test.dir/poscalc.cpp.o" "CMakeFiles/selection-test.dir/selectioncollection.cpp.o" "CMakeFiles/selection-test.dir/selectionoption.cpp.o" "CMakeFiles/selection-test.dir/toputils.cpp.o" "CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/selection-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -MF CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o.d -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o -MF CMakeFiles/commandline-test.dir/filenm.cpp.o.d -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/filenm.cpp [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o -MF CMakeFiles/commandline-test.dir/pargs.cpp.o.d -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/commandline/tests/pargs.cpp [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-MT src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o -MF CMakeFiles/math-test.dir/matrix.cpp.o.d -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/matrix.cpp /usr/bin/gmake -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build 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-DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/moduletest.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd_vector_operations.cpp [ 89%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/fileio-test.dir/checkpoint.cpp.o" "CMakeFiles/fileio-test.dir/confio.cpp.o" "CMakeFiles/fileio-test.dir/filemd5.cpp.o" "CMakeFiles/fileio-test.dir/filetypes.cpp.o" "CMakeFiles/fileio-test.dir/mrcserializer.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o" "CMakeFiles/fileio-test.dir/readinp.cpp.o" "CMakeFiles/fileio-test.dir/timecontrol.cpp.o" "CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o" "CMakeFiles/fileio-test.dir/tngio.cpp.o" "CMakeFiles/fileio-test.dir/xvgio.cpp.o" "CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fileio-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/onlinehelp/tests/helpwritercontext.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target hardware-test [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o -MF CMakeFiles/math-test.dir/multidimarray.cpp.o.d -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/multidimarray.cpp [ 89%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -MF CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/compressed_x_output.cpp [ 89%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target correlations-test [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target mdspan-test [ 89%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -MF CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o.d -o CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/parrinellorahman.cpp [ 89%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -MF CMakeFiles/analysisdata-test.dir/arraydata.cpp.o.d -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/arraydata.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target pbcutil-test [ 89%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target testutils-test [ 89%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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/usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -MF CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/checkpoint.cpp [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/listoflists.cpp.o -MF CMakeFiles/utility-test.dir/listoflists.cpp.o.d -o CMakeFiles/utility-test.dir/listoflists.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/listoflists.cpp [ 89%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_floatingpoint.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target table-test [ 89%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o" "CMakeFiles/options-test.dir/filenameoption.cpp.o" "CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o" "CMakeFiles/options-test.dir/option.cpp.o" "CMakeFiles/options-test.dir/optionsassigner.cpp.o" "CMakeFiles/options-test.dir/repeatingsection.cpp.o" "CMakeFiles/options-test.dir/timeunitmanager.cpp.o" "CMakeFiles/options-test.dir/treesupport.cpp.o" "CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/options-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o -MF CMakeFiles/analysisdata-test.dir/histogram.cpp.o.d -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/analysisdata/tests/histogram.cpp [ 89%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o" "CMakeFiles/commandline-test.dir/filenm.cpp.o" "CMakeFiles/commandline-test.dir/pargs.cpp.o" "CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/commandline-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 89%] Built target applied_forces-test [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o -MF CMakeFiles/utility-test.dir/logger.cpp.o.d -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/logger.cpp [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o -MF CMakeFiles/utility-test.dir/message_string_collector.cpp.o.d -o CMakeFiles/utility-test.dir/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/message_string_collector.cpp [ 90%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o -MF CMakeFiles/utility-test.dir/path.cpp.o.d -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/path.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -MF CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/helpwriting.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/simd-test.dir/simd4_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/tests/simd4_math.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -MF CMakeFiles/mdrun-io-test.dir/grompp.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/grompp.cpp [ 91%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 91%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o -MF CMakeFiles/math-test.dir/optimization.cpp.o.d -o CMakeFiles/math-test.dir/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/optimization.cpp [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/mimic.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 91%] Built target gpu_utils-test [ 91%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o -MF CMakeFiles/mdlib-test.dir/settle.cpp.o.d -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settle.cpp [ 91%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" 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-I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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91%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o -MF CMakeFiles/math-test.dir/paddedvector.cpp.o.d -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/paddedvector.cpp [ 91%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/distance.cpp [ 91%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/dssp.cpp [ 91%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/simd-test.dir/base.cpp.o" "CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o" "CMakeFiles/simd-test.dir/scalar.cpp.o" "CMakeFiles/simd-test.dir/scalar_util.cpp.o" "CMakeFiles/simd-test.dir/scalar_math.cpp.o" 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/usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -MF CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/trajectory_writing.cpp [ 91%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o" "CMakeFiles/analysisdata-test.dir/arraydata.cpp.o" "CMakeFiles/analysisdata-test.dir/average.cpp.o" "CMakeFiles/analysisdata-test.dir/histogram.cpp.o" "CMakeFiles/analysisdata-test.dir/lifetime.cpp.o" "CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/analysisdata-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -MF CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/initialconstraints.cpp [ 91%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o cd 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-isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o -MF CMakeFiles/utility-test.dir/range.cpp.o.d -o CMakeFiles/utility-test.dir/range.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/range.cpp [ 91%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o -MF CMakeFiles/math-test.dir/vectypes.cpp.o.d -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/tests/vectypes.cpp [ 91%] Linking CXX executable ../../../../bin/mdrun-modules-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o" "CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o" "CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -MF CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o.d -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp [ 92%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/settletestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/settletestdata.cpp [ 92%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 92%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 92%] Built target random-test [ 92%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/termination.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -MF CMakeFiles/mdrun-test.dir/freezegroups.cpp.o.d -o CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/freezegroups.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/stringtoenumvalueconverter.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests 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CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o" 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src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/ewaldsurfaceterm.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/orires.cpp [ 94%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/simulationsignal.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-io-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o" "CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o" "CMakeFiles/mdrun-io-test.dir/grompp.cpp.o" "CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o" "CMakeFiles/mdrun-io-test.dir/termination.cpp.o" "CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/stringutil.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/hbond.cpp [ 95%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o -MF CMakeFiles/mdlib-test.dir/updategroups.cpp.o.d -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/updategroups.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/nonbonded_bench.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -MF CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o.d -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/tpitest.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 96%] Built target energyanalysis-test [ 96%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -MF CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o.d -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/updategroupscog.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 96%] Built target mdrunutility-mpi-test [ 96%] 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-MT src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o" 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../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 96%] Linking CXX executable ../../../../bin/mdrun-single-rank-algorithms-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-single-rank-algorithms-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-single-rank-algorithms-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 96%] Built target listed_forces-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 96%] Built target mdrunutility-test [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/rerun.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/minimize-test.dir/minimize.cpp.o" 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simple_mdrun.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-tpi-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o" 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-std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o -MF CMakeFiles/utility-test.dir/typetraits.cpp.o.d -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/tests/typetraits.cpp [ 96%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/tests/leapfrogtestrunners_gpu.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/DependInfo.cmake "--color=" [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/multisimtest.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/select.cpp [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/scattering.cpp [ 97%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 97%] Built target pdb2gmx1-test [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 97%] Built target awh-test [ 97%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/replicaexchange.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/replicaexchange_equivalence.cpp [ 97%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/utility-test.dir/alignedallocator.cpp.o" "CMakeFiles/utility-test.dir/arrayref.cpp.o" "CMakeFiles/utility-test.dir/booltype.cpp.o" "CMakeFiles/utility-test.dir/bitmask32.cpp.o" "CMakeFiles/utility-test.dir/bitmask64.cpp.o" 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"CMakeFiles/utility-test.dir/textwriter.cpp.o" "CMakeFiles/utility-test.dir/typetraits.cpp.o" "CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 97%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o" "CMakeFiles/math-test.dir/boxmatrix.cpp.o" "CMakeFiles/math-test.dir/coordinatetransformation.cpp.o" "CMakeFiles/math-test.dir/densityfit.cpp.o" "CMakeFiles/math-test.dir/dofit.cpp.o" "CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o" "CMakeFiles/math-test.dir/functions.cpp.o" "CMakeFiles/math-test.dir/gausstransform.cpp.o" "CMakeFiles/math-test.dir/densityfittingforce.cpp.o" "CMakeFiles/math-test.dir/invertmatrix.cpp.o" "CMakeFiles/math-test.dir/matrix.cpp.o" "CMakeFiles/math-test.dir/multidimarray.cpp.o" "CMakeFiles/math-test.dir/neldermead.cpp.o" "CMakeFiles/math-test.dir/optimization.cpp.o" "CMakeFiles/math-test.dir/paddedvector.cpp.o" "CMakeFiles/math-test.dir/vectypes.cpp.o" "CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/math-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io 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-Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 97%] Built target pdb2gmx3-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests 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/usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pmetest.cpp [ 97%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o" "CMakeFiles/mdlib-test.dir/calcvir.cpp.o" "CMakeFiles/mdlib-test.dir/constr.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/ebin.cpp.o" "CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o" "CMakeFiles/mdlib-test.dir/energyoutput.cpp.o" "CMakeFiles/mdlib-test.dir/expanded.cpp.o" "CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrog.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o" "CMakeFiles/mdlib-test.dir/settle.cpp.o" "CMakeFiles/mdlib-test.dir/settletestdata.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/shake.cpp.o" "CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o" "CMakeFiles/mdlib-test.dir/updategroups.cpp.o" "CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o" "CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdlib-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 97%] Linking CXX executable ../../../../bin/mdrun-multisim-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" 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-isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 97%] Built target simd-test [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 97%] Built target mdtypes-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/trajectory.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 97%] Built target topology-test [ 97%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o" "CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-pme-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_coupling.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/trajectoryanalysis/tests/unionfind.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Built target pdb2gmx2-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Built target fileio-test [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Built target nonbonded-fep-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Built target gmxana-test [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions.cpp [ 98%] Linking CXX executable ../../../../bin/mdrun-coordination-basic-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-basic-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags 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directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Built target commandline-test [ 98%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o" 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../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a [ 98%] Linking CXX executable ../../../../bin/mdrun-coordination-coupling-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-coupling-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-coupling-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [ 98%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-equivalence-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-equivalence-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/freeenergy.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/periodicactions_constraints.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Built target options-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/pull_rotation.cpp [100%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem 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-MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target coordinateio-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target analysisdata-test [100%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/mdrun-coordination-constraints-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-constraints-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-constraints-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [100%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/mdrun-fep-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o" "CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o 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/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests/simulator.cpp /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src 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src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/mdrun-rotation-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-rotation-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o" "CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-rotation-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [100%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/mdrun-pull-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-pull-test.dir/pull.cpp.o" "CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-pull-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [100%] Linking CXX executable ../../../../bin/mdrun-simulator-comparison-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-simulator-comparison-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o" "CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-simulator-comparison-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so [100%] Linking CXX executable ../../../../bin/mdrun-vsites-test cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-vsites-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags "CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o" "CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-vsites-test -Wl,-rpath,/usr/lib64/openmpi/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a ../../../../lib/libgmock.a /usr/lib64/openmpi/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib/gcc/x86_64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/openmpi/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target selection-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target math-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target utility-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdlib-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target qmmm_applied_forces-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target colvars_applied_forces-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target nbnxm-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target tool-test /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target gmxpreprocess-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target trajectoryanalysis-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-modules-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-output-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-mpi-pme-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-single-rank-algorithms-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-io-test gmake[3]: Leaving 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'/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-pull-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target minimize-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-coordination-coupling-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-vsites-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-coordination-basic-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-rotation-test [100%] Built target mdrun-fep-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-multisim-replex-equivalence-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-coordination-constraints-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target mdrun-simulator-comparison-test /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/CMakeFiles/tests.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target tests /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build Connected to MAKE jobserver Start 1: TestUtilsUnitTests 1/77 Test #1: TestUtilsUnitTests ........................ Passed 1.60 sec Start 2: TestUtilsMpiUnitTests 2/77 Test #2: TestUtilsMpiUnitTests ..................... Passed 1.64 sec Start 3: UtilityUnitTests 3/77 Test #3: UtilityUnitTests .......................... Passed 1.60 sec Start 4: UtilityMpiUnitTests 4/77 Test #4: UtilityMpiUnitTests ....................... Passed 1.61 sec Start 5: GmxlibTests 5/77 Test #5: GmxlibTests ............................... Passed 1.61 sec Start 6: MdlibUnitTest 6/77 Test #6: MdlibUnitTest ............................. Passed 1.75 sec Start 7: AwhTest 7/77 Test #7: AwhTest ................................... Passed 1.63 sec Start 8: DensityFittingAppliedForcesUnitTest 8/77 Test #8: DensityFittingAppliedForcesUnitTest ....... Passed 1.59 sec Start 9: QMMMAppliedForcesUnitTest 9/77 Test #9: QMMMAppliedForcesUnitTest ................. Passed 1.62 sec Start 10: ColvarsAppliedForcesUnitTest 10/77 Test #10: ColvarsAppliedForcesUnitTest .............. Passed 1.63 sec Start 11: AppliedForcesUnitTest 11/77 Test #11: AppliedForcesUnitTest ..................... Passed 1.59 sec Start 12: ListedForcesTest 12/77 Test #12: ListedForcesTest .......................... Passed 1.61 sec Start 13: NbnxmTests 13/77 Test #13: NbnxmTests ................................ Passed 1.77 sec Start 14: CommandLineUnitTests 14/77 Test #14: CommandLineUnitTests ...................... Passed 1.60 sec Start 15: DomDecTests 15/77 Test #15: DomDecTests ............................... Passed 1.59 sec Start 16: DomDecMpiTests 16/77 Test #16: DomDecMpiTests ............................ Passed 1.62 sec Start 17: EwaldUnitTests 17/77 Test #17: EwaldUnitTests ............................ Passed 1.91 sec Start 18: FFTUnitTests 18/77 Test #18: FFTUnitTests .............................. Passed 1.67 sec Start 19: GpuUtilsUnitTests 19/77 Test #19: GpuUtilsUnitTests ......................... Passed 1.59 sec Start 20: HardwareUnitTests 20/77 Test #20: HardwareUnitTests ......................... Passed 1.62 sec Start 21: MathUnitTests 21/77 Test #21: MathUnitTests ............................. Passed 1.65 sec Start 22: MdrunUtilityUnitTests 22/77 Test #22: MdrunUtilityUnitTests ..................... Passed 1.59 sec Start 23: MdrunUtilityMpiUnitTests 23/77 Test #23: MdrunUtilityMpiUnitTests .................. Passed 1.62 sec Start 24: MDSpanTests 24/77 Test #24: MDSpanTests ............................... Passed 1.59 sec Start 25: MdtypesUnitTest 25/77 Test #25: MdtypesUnitTest ........................... Passed 1.60 sec Start 26: OnlineHelpUnitTests 26/77 Test #26: OnlineHelpUnitTests ....................... Passed 1.59 sec Start 27: OptionsUnitTests 27/77 Test #27: OptionsUnitTests .......................... Passed 1.59 sec Start 28: PbcutilUnitTest 28/77 Test #28: PbcutilUnitTest ........................... Passed 1.59 sec Start 29: RandomUnitTests 29/77 Test #29: RandomUnitTests ........................... Passed 1.59 sec Start 30: RestraintTests 30/77 Test #30: RestraintTests ............................ Passed 1.58 sec Start 31: TableUnitTests 31/77 Test #31: TableUnitTests ............................ Passed 1.80 sec Start 32: TaskAssignmentUnitTests 32/77 Test #32: TaskAssignmentUnitTests ................... Passed 1.59 sec Start 33: GmxTimingTests 33/77 Test #33: GmxTimingTests ............................ Passed 1.59 sec Start 34: TopologyTest 34/77 Test #34: TopologyTest .............................. Passed 1.60 sec Start 35: PullTest 35/77 Test #35: PullTest .................................. Passed 1.58 sec Start 36: SimdUnitTests 36/77 Test #36: SimdUnitTests ............................. Passed 1.63 sec Start 37: CompatibilityHelpersTests 37/77 Test #37: CompatibilityHelpersTests ................. Passed 1.59 sec Start 38: GmxAnaTest 38/77 Test #38: GmxAnaTest ................................ Passed 2.39 sec Start 39: GmxPreprocessTests 39/77 Test #39: GmxPreprocessTests ........................ Passed 2.58 sec Start 40: Pdb2gmx1Test 40/77 Test #40: Pdb2gmx1Test .............................. Passed 2.42 sec Start 41: Pdb2gmx2Test 41/77 Test #41: Pdb2gmx2Test .............................. Passed 2.72 sec Start 42: Pdb2gmx3Test 42/77 Test #42: Pdb2gmx3Test .............................. Passed 3.18 sec Start 43: CorrelationsTest 43/77 Test #43: CorrelationsTest .......................... Passed 2.21 sec Start 44: AnalysisDataUnitTests 44/77 Test #44: AnalysisDataUnitTests ..................... Passed 1.61 sec Start 45: CoordinateIOTests 45/77 Test #45: CoordinateIOTests ......................... Passed 1.64 sec Start 46: TrajectoryAnalysisUnitTests 46/77 Test #46: TrajectoryAnalysisUnitTests ............... Passed 7.93 sec Start 47: EnergyAnalysisUnitTests 47/77 Test #47: EnergyAnalysisUnitTests ................... Passed 1.71 sec Start 48: ToolUnitTests 48/77 Test #48: ToolUnitTests ............................. Passed 3.96 sec Start 49: FileIOTests 49/77 Test #49: FileIOTests ............................... Passed 1.60 sec Start 50: SelectionUnitTests 50/77 Test #50: SelectionUnitTests ........................ Passed 1.71 sec Start 51: MdrunOutputTests 51/77 Test #51: MdrunOutputTests .......................... Passed 1.71 sec Start 52: MdrunModulesTests 52/77 Test #52: MdrunModulesTests ......................... Passed 1.84 sec Start 53: MdrunIOTests 53/77 Test #53: MdrunIOTests .............................. Passed 3.94 sec Start 54: MdrunTestsOneRank 54/77 Test #54: MdrunTestsOneRank ......................... Passed 3.98 sec Start 55: MdrunTestsTwoRanks 55/77 Test #55: MdrunTestsTwoRanks ........................ Passed 3.84 sec Start 56: MdrunSingleRankAlgorithmsTests 56/77 Test #56: MdrunSingleRankAlgorithmsTests ............ Passed 3.02 sec Start 57: Minimize1RankTests 57/77 Test #57: Minimize1RankTests ........................ Passed 2.85 sec Start 58: Minimize2RankTests 58/77 Test #58: Minimize2RankTests ........................ Passed 2.85 sec Start 59: MdrunNonIntegratorTests 59/77 Test #59: MdrunNonIntegratorTests ................... Passed 6.07 sec Start 60: MdrunTpiTests 60/77 Test #60: MdrunTpiTests ............................. Passed 2.51 sec Start 61: MdrunMpiTests 61/77 Test #61: MdrunMpiTests ............................. Passed 2.03 sec Start 62: MdrunMultiSimTests 62/77 Test #62: MdrunMultiSimTests ........................ Passed 1.71 sec Start 63: MdrunMultiSimReplexTests 63/77 Test #63: MdrunMultiSimReplexTests .................. Passed 1.70 sec Start 64: MdrunMultiSimReplexEquivalenceTests 64/77 Test #64: MdrunMultiSimReplexEquivalenceTests ....... Passed 5.65 sec Start 65: MdrunMpi1RankPmeTests 65/77 Test #65: MdrunMpi1RankPmeTests ..................... Passed 2.41 sec Start 66: MdrunMpi2RankPmeTests 66/77 Test #66: MdrunMpi2RankPmeTests ..................... Passed 2.84 sec Start 67: MdrunCoordinationBasicTests1Rank 67/77 Test #67: MdrunCoordinationBasicTests1Rank .......... Passed 1.67 sec Start 68: MdrunCoordinationBasicTests2Ranks 68/77 Test #68: MdrunCoordinationBasicTests2Ranks ......... Passed 1.71 sec Start 69: MdrunCoordinationCouplingTests1Rank 69/77 Test #69: MdrunCoordinationCouplingTests1Rank ....... Passed 2.87 sec Start 70: MdrunCoordinationCouplingTests2Ranks 70/77 Test #70: MdrunCoordinationCouplingTests2Ranks ...... Passed 2.98 sec Start 71: MdrunCoordinationConstraintsTests1Rank 71/77 Test #71: MdrunCoordinationConstraintsTests1Rank .... Passed 29.93 sec Start 72: MdrunCoordinationConstraintsTests2Ranks 72/77 Test #72: MdrunCoordinationConstraintsTests2Ranks ... Passed 31.55 sec Start 73: MdrunFEPTests 73/77 Test #73: MdrunFEPTests ............................. Passed 3.99 sec Start 74: MdrunPullTests 74/77 Test #74: MdrunPullTests ............................ Passed 3.37 sec Start 75: MdrunRotationTests 75/77 Test #75: MdrunRotationTests ........................ Passed 1.73 sec Start 76: MdrunSimulatorComparison 76/77 Test #76: MdrunSimulatorComparison .................. Passed 13.34 sec Start 77: MdrunVirtualSiteTests 77/77 Test #77: MdrunVirtualSiteTests ..................... Passed 1.98 sec 100% tests passed, 0 tests failed out of 77 Label Time Summary: GTest = 401.30 sec*proc (77 tests) IntegrationTest = 187.87 sec*proc (22 tests) MpiTest = 231.39 sec*proc (21 tests) QuickGpuTest = 81.14 sec*proc (18 tests) SlowGpuTest = 224.71 sec*proc (14 tests) SlowTest = 131.41 sec*proc (13 tests) UnitTest = 82.02 sec*proc (42 tests) Total Test time (real) = 240.03 sec gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target run-ctest-nophys /usr/bin/gmake -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/tests /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target missing-tests-notice /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/CMakeFiles/check.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' [100%] Built target check gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build/CMakeFiles 0 gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024.3-build/gromacs-2024.3/openmpi_d/redhat-linux-build' + [[ openmpi = openmpi ]] ~/build/BUILD/gromacs-2024.3-build/gromacs-2024.3 + unset OMPI_MCA_rmaps_base_oversubscribe + popd + test -n openmpi + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; unset MPI_MAN; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset _LMFILES_; unset LOADEDMODULES; unset CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p Processing files: gromacs-2024.3-1.fc42.x86_64 + exit 0 Provides: gromacs = 2024.3-1.fc42 gromacs(x86-64) = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgromacs.so.9()(64bit) libgromacs_d.so.9()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) rtld(GNU_HASH) Obsoletes: gromacs-csh < 2016.1-2 gromacs-ngmx < 5.0.4-1 gromacs-zsh < 2016.1-2 Recommends: gromacs-opencl = 2024.3-1.fc42 Processing files: gromacs-common-2024.3-1.fc42.noarch Provides: gromacs-bash = 2024.3-1.fc42 gromacs-common = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: gromacs-bash < 5.0.4-1 Processing files: gromacs-opencl-2024.3-1.fc42.x86_64 Provides: gromacs-opencl = 2024.3-1.fc42 gromacs-opencl(x86-64) = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Suggests: beignet mesa-libOpenCL pocl Processing files: gromacs-doc-2024.3-1.fc42.noarch Provides: gromacs-doc = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: gromacs-common < 5.0.5-2 Processing files: gromacs-devel-2024.3-1.fc42.x86_64 Provides: cmake(gmxapi) = 0.4.0 cmake(gromacs) = 2024.3 cmake(gromacs_d) = 2024.3 gromacs-devel = 2024.3-1.fc42 gromacs-devel(x86-64) = 2024.3-1.fc42 pkgconfig(libgromacs) = 2024.3-Fedora42 pkgconfig(libgromacs_d) = 2024.3-Fedora42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config cmake-filesystem pkgconfig(fftw3) pkgconfig(fftw3f) Obsoletes: gromacs-mpich-devel < 2016-0.1.20160318gitbec9c87 gromacs-openmpi-devel < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-libs-2024.3-1.fc42.x86_64 Provides: gromacs-libs = 2024.3-1.fc42 gromacs-libs(x86-64) = 2024.3-1.fc42 libgmxapi.so.0()(64bit) libgmxapi_d.so.0()(64bit) libgromacs.so.9()(64bit) libgromacs_d.so.9()(64bit) libnblib_gmx.so.0()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libOpenCL.so.1()(64bit) libOpenCL.so.1(OPENCL_1.0)(64bit) libOpenCL.so.1(OPENCL_1.2)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libfftw3f.so.3()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libgromacs.so.9()(64bit) libgromacs_d.so.9()(64bit) liblmfit.so.8()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libmuparser.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtng_io.so.1()(64bit) rtld(GNU_HASH) Processing files: gromacs-openmpi-2024.3-1.fc42.x86_64 Provides: gromacs-openmpi = 2024.3-1.fc42 gromacs-openmpi(x86-64) = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libOpenCL.so.1()(64bit) libOpenCL.so.1(OPENCL_1.0)(64bit) libOpenCL.so.1(OPENCL_1.2)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libfftw3f.so.3()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) liblmfit.so.8()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmuparser.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtng_io.so.1()(64bit) rtld(GNU_HASH) Obsoletes: gromacs-openmpi-libs < 2016-0.1.20160318gitbec9c87 Recommends: gromacs-opencl = 2024.3-1.fc42 Processing files: gromacs-mpich-2024.3-1.fc42.x86_64 Provides: gromacs-mpich = 2024.3-1.fc42 gromacs-mpich(x86-64) = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libOpenCL.so.1()(64bit) libOpenCL.so.1(OPENCL_1.0)(64bit) libOpenCL.so.1(OPENCL_1.2)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libfftw3f.so.3()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) liblmfit.so.8()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libmpi.so.12()(64bit)(mpich-x86_64) libmuparser.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtng_io.so.1()(64bit) rtld(GNU_HASH) Obsoletes: gromacs-mpich-libs < 2016-0.1.20160318gitbec9c87 Recommends: gromacs-opencl = 2024.3-1.fc42 Processing files: gromacs-debugsource-2024.3-1.fc42.x86_64 Provides: gromacs-debugsource = 2024.3-1.fc42 gromacs-debugsource(x86-64) = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: gromacs-debuginfo-2024.3-1.fc42.x86_64 Provides: debuginfo(build-id) = 92b90db504029d3e9ffcc80b80daf5e7598efdbe debuginfo(build-id) = ae0d23e1b3f20c849c40e564d16842d962498c11 gromacs-debuginfo = 2024.3-1.fc42 gromacs-debuginfo(x86-64) = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(x86-64) = 2024.3-1.fc42 Processing files: gromacs-libs-debuginfo-2024.3-1.fc42.x86_64 Provides: debuginfo(build-id) = 2ea446014417a5101d7b0930119320773c24348d debuginfo(build-id) = 40c085af6d0230dd307e45ab1ba83eecc8c376cb debuginfo(build-id) = 438eb3dea186e34eb90f7f636f61b9c2b5deaa37 debuginfo(build-id) = c9503a6ab9fe297b0fef220200d7d732d143d8f9 debuginfo(build-id) = e7944f6d2864294396fc341ce1ecedeb808c2a21 gromacs-libs-debuginfo = 2024.3-1.fc42 gromacs-libs-debuginfo(x86-64) = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(x86-64) = 2024.3-1.fc42 Processing files: gromacs-openmpi-debuginfo-2024.3-1.fc42.x86_64 Provides: debuginfo(build-id) = 26b1f8b587b129ffb7ad598230838e5c7a7a2143 debuginfo(build-id) = dee47533488636eb14cd7b4658dd8d4857aa0654 gromacs-openmpi-debuginfo = 2024.3-1.fc42 gromacs-openmpi-debuginfo(x86-64) = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(x86-64) = 2024.3-1.fc42 Processing files: gromacs-mpich-debuginfo-2024.3-1.fc42.x86_64 Provides: debuginfo(build-id) = 87ca94678e39f3fa09692db47bd299340746e411 debuginfo(build-id) = d980744c35daa13912193cce668af27c0366c3dd gromacs-mpich-debuginfo = 2024.3-1.fc42 gromacs-mpich-debuginfo(x86-64) = 2024.3-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(x86-64) = 2024.3-1.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/gromacs-2024.3-build/BUILDROOT Wrote: /builddir/build/RPMS/gromacs-2024.3-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/gromacs-opencl-2024.3-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/gromacs-devel-2024.3-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/gromacs-debuginfo-2024.3-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/gromacs-common-2024.3-1.fc42.noarch.rpm Wrote: /builddir/build/RPMS/gromacs-doc-2024.3-1.fc42.noarch.rpm Wrote: /builddir/build/RPMS/gromacs-debugsource-2024.3-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/gromacs-mpich-2024.3-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/gromacs-openmpi-2024.3-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/gromacs-libs-2024.3-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/gromacs-openmpi-debuginfo-2024.3-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/gromacs-mpich-debuginfo-2024.3-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/gromacs-libs-debuginfo-2024.3-1.fc42.x86_64.rpm Child return code was: 0